Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 KRT8P45-201ENST00000414328 1447 ntBASIC21.27■■□□□ 1
CCDC60Q8IWA6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC60Q8IWA6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
CCDC60Q8IWA6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CCDC60Q8IWA6 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 AC008622.2-201ENST00000617006 1229 ntBASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 AC141257.4-201ENST00000634557 245 ntBASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 AC136944.6-201ENST00000634818 245 ntBASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC60Q8IWA6 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 WWOX-216ENST00000569818 525 ntBASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 AC139887.4-201ENST00000607877 719 ntBASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 AL590326.2-201ENST00000625139 305 ntBASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC60Q8IWA6 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AK4P3-201ENST00000418260 669 ntBASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC60Q8IWA6 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms