Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.12■□□□□ 0.97
PCGF1Q9BSM1 MIR4449-201ENST00000578365 66 ntBASIC21.12■□□□□ 0.97
PCGF1Q9BSM1 AC135983.2-203ENST00000454486 1613 ntBASIC21.11■□□□□ 0.97
PCGF1Q9BSM1 WHAMMP2-203ENST00000563942 1603 ntBASIC21.11■□□□□ 0.97
PCGF1Q9BSM1 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCGF1Q9BSM1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCGF1Q9BSM1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCGF1Q9BSM1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PCGF1Q9BSM1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCGF1Q9BSM1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCGF1Q9BSM1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PCGF1Q9BSM1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCGF1Q9BSM1 AL139393.2-201ENST00000608721 2025 ntBASIC21.08■□□□□ 0.97
PCGF1Q9BSM1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
PCGF1Q9BSM1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCGF1Q9BSM1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCGF1Q9BSM1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCGF1Q9BSM1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCGF1Q9BSM1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.05■□□□□ 0.96
PCGF1Q9BSM1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.05■□□□□ 0.96
PCGF1Q9BSM1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCGF1Q9BSM1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCGF1Q9BSM1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCGF1Q9BSM1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PCGF1Q9BSM1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCGF1Q9BSM1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.04■□□□□ 0.96
PCGF1Q9BSM1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCGF1Q9BSM1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCGF1Q9BSM1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.03■□□□□ 0.96
PCGF1Q9BSM1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCGF1Q9BSM1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCGF1Q9BSM1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.02■□□□□ 0.96
PCGF1Q9BSM1 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCGF1Q9BSM1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCGF1Q9BSM1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 AP004833.2-201ENST00000532228 1454 ntBASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.01■□□□□ 0.95
PCGF1Q9BSM1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PCGF1Q9BSM1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PCGF1Q9BSM1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21■□□□□ 0.95
PCGF1Q9BSM1 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCGF1Q9BSM1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
PCGF1Q9BSM1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCGF1Q9BSM1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCGF1Q9BSM1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCGF1Q9BSM1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCGF1Q9BSM1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.98■□□□□ 0.95
PCGF1Q9BSM1 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 AC110285.7-201ENST00000624417 1536 ntBASIC20.97■□□□□ 0.95
PCGF1Q9BSM1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCGF1Q9BSM1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCGF1Q9BSM1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.94■□□□□ 0.94
PCGF1Q9BSM1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.94■□□□□ 0.94
PCGF1Q9BSM1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCGF1Q9BSM1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCGF1Q9BSM1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 AC135731.1-201ENST00000569415 2548 ntBASIC20.93■□□□□ 0.94
PCGF1Q9BSM1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCGF1Q9BSM1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCGF1Q9BSM1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
PCGF1Q9BSM1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCGF1Q9BSM1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCGF1Q9BSM1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCGF1Q9BSM1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCGF1Q9BSM1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCGF1Q9BSM1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms