Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC28Q86X40 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC28Q86X40 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC28Q86X40 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
LRRC28Q86X40 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC22.4■■□□□ 1.18
LRRC28Q86X40 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
LRRC28Q86X40 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
LRRC28Q86X40 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.4■■□□□ 1.18
LRRC28Q86X40 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC22.39■■□□□ 1.18
LRRC28Q86X40 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.39■■□□□ 1.17
LRRC28Q86X40 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
LRRC28Q86X40 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC28Q86X40 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC28Q86X40 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.38■■□□□ 1.17
LRRC28Q86X40 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC22.37■■□□□ 1.17
LRRC28Q86X40 RPS2-209ENST00000529806 993 ntTSL 3 BASIC22.37■■□□□ 1.17
LRRC28Q86X40 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC22.37■■□□□ 1.17
LRRC28Q86X40 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
LRRC28Q86X40 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC28Q86X40 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC28Q86X40 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC28Q86X40 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.36■■□□□ 1.17
LRRC28Q86X40 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
LRRC28Q86X40 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.35■■□□□ 1.17
LRRC28Q86X40 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
LRRC28Q86X40 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.35■■□□□ 1.17
LRRC28Q86X40 AC044849.2-201ENST00000606596 710 ntBASIC22.35■■□□□ 1.17
LRRC28Q86X40 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.35■■□□□ 1.17
LRRC28Q86X40 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
LRRC28Q86X40 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRRC28Q86X40 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRRC28Q86X40 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.34■■□□□ 1.17
LRRC28Q86X40 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRRC28Q86X40 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRRC28Q86X40 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRRC28Q86X40 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
LRRC28Q86X40 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC22.32■■□□□ 1.16
LRRC28Q86X40 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 LINC01003-201ENST00000564834 1764 ntBASIC22.32■■□□□ 1.16
LRRC28Q86X40 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRRC28Q86X40 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LRRC28Q86X40 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LRRC28Q86X40 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LRRC28Q86X40 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.31■■□□□ 1.16
LRRC28Q86X40 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRRC28Q86X40 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC22.3■■□□□ 1.16
LRRC28Q86X40 AC010864.1-201ENST00000609407 1511 ntBASIC22.3■■□□□ 1.16
LRRC28Q86X40 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
LRRC28Q86X40 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRC28Q86X40 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC22.29■■□□□ 1.16
LRRC28Q86X40 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRRC28Q86X40 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.28■■□□□ 1.16
LRRC28Q86X40 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC28Q86X40 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC28Q86X40 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC28Q86X40 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRRC28Q86X40 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC28Q86X40 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC28Q86X40 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRC28Q86X40 AP004833.2-201ENST00000532228 1454 ntBASIC22.27■■□□□ 1.16
LRRC28Q86X40 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
LRRC28Q86X40 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRC28Q86X40 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC28Q86X40 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC22.25■■□□□ 1.15
LRRC28Q86X40 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC28Q86X40 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC28Q86X40 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC22.25■■□□□ 1.15
LRRC28Q86X40 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRC28Q86X40 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
LRRC28Q86X40 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC28Q86X40 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.24■■□□□ 1.15
LRRC28Q86X40 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC28Q86X40 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC28Q86X40 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC28Q86X40 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC28Q86X40 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC28Q86X40 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC28Q86X40 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC28Q86X40 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC28Q86X40 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC28Q86X40 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC28Q86X40 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC28Q86X40 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
LRRC28Q86X40 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC28Q86X40 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms