Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB3O15347 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB3O15347 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGB3O15347 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB3O15347 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB3O15347 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB3O15347 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
HMGB3O15347 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB3O15347 DYNLL1-208ENST00000550178 581 ntBASIC20.31■□□□□ 0.84
HMGB3O15347 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
HMGB3O15347 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB3O15347 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HMGB3O15347 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB3O15347 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB3O15347 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB3O15347 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB3O15347 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB3O15347 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB3O15347 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB3O15347 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB3O15347 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGB3O15347 BX255925.1-201ENST00000566954 1854 ntBASIC20.28■□□□□ 0.84
HMGB3O15347 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HMGB3O15347 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB3O15347 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HMGB3O15347 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HMGB3O15347 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGB3O15347 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB3O15347 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGB3O15347 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGB3O15347 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HMGB3O15347 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB3O15347 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB3O15347 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB3O15347 AL449106.1-201ENST00000608517 1980 ntBASIC20.24■□□□□ 0.83
HMGB3O15347 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB3O15347 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGB3O15347 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB3O15347 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB3O15347 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HMGB3O15347 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
HMGB3O15347 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB3O15347 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGB3O15347 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HMGB3O15347 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB3O15347 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HMGB3O15347 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB3O15347 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB3O15347 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB3O15347 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB3O15347 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGB3O15347 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB3O15347 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HMGB3O15347 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB3O15347 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB3O15347 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
HMGB3O15347 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB3O15347 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB3O15347 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB3O15347 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB3O15347 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HMGB3O15347 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB3O15347 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB3O15347 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HMGB3O15347 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB3O15347 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGB3O15347 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB3O15347 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB3O15347 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB3O15347 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB3O15347 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB3O15347 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB3O15347 AC010864.1-201ENST00000609407 1511 ntBASIC20.17■□□□□ 0.82
HMGB3O15347 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB3O15347 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB3O15347 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB3O15347 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB3O15347 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms