Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV4A0A0B4J268 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 WHAMMP2-203ENST00000563942 1603 ntBASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 BX255925.1-201ENST00000566954 1854 ntBASIC18.16■□□□□ 0.5
TRAV4A0A0B4J268 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.15■□□□□ 0.5
TRAV4A0A0B4J268 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV4A0A0B4J268 AP002414.2-202ENST00000590929 1450 ntBASIC18.15■□□□□ 0.5
TRAV4A0A0B4J268 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV4A0A0B4J268 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV4A0A0B4J268 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV4A0A0B4J268 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV4A0A0B4J268 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV4A0A0B4J268 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV4A0A0B4J268 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV4A0A0B4J268 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV4A0A0B4J268 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV4A0A0B4J268 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV4A0A0B4J268 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV4A0A0B4J268 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV4A0A0B4J268 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV4A0A0B4J268 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
TRAV4A0A0B4J268 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV4A0A0B4J268 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.1■□□□□ 0.49
TRAV4A0A0B4J268 LINC01003-201ENST00000564834 1764 ntBASIC18.09■□□□□ 0.49
TRAV4A0A0B4J268 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAV4A0A0B4J268 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV4A0A0B4J268 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV4A0A0B4J268 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV4A0A0B4J268 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV4A0A0B4J268 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV4A0A0B4J268 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV4A0A0B4J268 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV4A0A0B4J268 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV4A0A0B4J268 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 SHF-208ENST00000560734 1731 ntTSL 3 BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV4A0A0B4J268 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV4A0A0B4J268 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAV4A0A0B4J268 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 DUX4L29-201ENST00000425409 679 ntBASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 AC018358.1-201ENST00000631079 1402 ntBASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV4A0A0B4J268 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV4A0A0B4J268 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRAV4A0A0B4J268 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRAV4A0A0B4J268 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV4A0A0B4J268 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV4A0A0B4J268 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAV4A0A0B4J268 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV4A0A0B4J268 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRAV4A0A0B4J268 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV4A0A0B4J268 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV4A0A0B4J268 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAV4A0A0B4J268 AC021231.2-201ENST00000594613 730 ntBASIC18■□□□□ 0.47
TRAV4A0A0B4J268 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms