Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 MIR6090-201ENST00000622481 60 ntBASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV3A0A0B4J244 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV3A0A0B4J244 DUX4L28-201ENST00000623687 678 ntBASIC20.43■□□□□ 0.86
TRAV3A0A0B4J244 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV3A0A0B4J244 AP002414.2-202ENST00000590929 1450 ntBASIC20.43■□□□□ 0.86
TRAV3A0A0B4J244 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV3A0A0B4J244 AC135983.2-203ENST00000454486 1613 ntBASIC20.42■□□□□ 0.86
TRAV3A0A0B4J244 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV3A0A0B4J244 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV3A0A0B4J244 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 WHAMMP2-203ENST00000563942 1603 ntBASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV3A0A0B4J244 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV3A0A0B4J244 AC108673.1-201ENST00000510422 1159 ntBASIC20.4■□□□□ 0.86
TRAV3A0A0B4J244 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV3A0A0B4J244 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV3A0A0B4J244 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
TRAV3A0A0B4J244 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV3A0A0B4J244 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV3A0A0B4J244 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV3A0A0B4J244 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV3A0A0B4J244 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV3A0A0B4J244 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV3A0A0B4J244 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV3A0A0B4J244 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.38■□□□□ 0.85
TRAV3A0A0B4J244 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
TRAV3A0A0B4J244 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV3A0A0B4J244 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAV3A0A0B4J244 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV3A0A0B4J244 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV3A0A0B4J244 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV3A0A0B4J244 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TRAV3A0A0B4J244 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV3A0A0B4J244 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV3A0A0B4J244 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV3A0A0B4J244 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV3A0A0B4J244 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV3A0A0B4J244 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV3A0A0B4J244 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.35■□□□□ 0.85
TRAV3A0A0B4J244 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV3A0A0B4J244 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
TRAV3A0A0B4J244 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TRAV3A0A0B4J244 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAV3A0A0B4J244 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.33■□□□□ 0.85
TRAV3A0A0B4J244 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.33■□□□□ 0.85
TRAV3A0A0B4J244 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV3A0A0B4J244 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV3A0A0B4J244 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV3A0A0B4J244 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV3A0A0B4J244 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
TRAV3A0A0B4J244 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV3A0A0B4J244 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRAV3A0A0B4J244 LINC00273-201ENST00000539813 1452 ntBASIC20.31■□□□□ 0.84
TRAV3A0A0B4J244 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
TRAV3A0A0B4J244 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.31■□□□□ 0.84
TRAV3A0A0B4J244 MIR3665-201ENST00000578708 105 ntBASIC20.31■□□□□ 0.84
TRAV3A0A0B4J244 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV3A0A0B4J244 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAV3A0A0B4J244 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV3A0A0B4J244 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAV3A0A0B4J244 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV3A0A0B4J244 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.27■□□□□ 0.83
TRAV3A0A0B4J244 AC018358.1-201ENST00000631079 1402 ntBASIC20.27■□□□□ 0.83
TRAV3A0A0B4J244 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV3A0A0B4J244 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV3A0A0B4J244 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV3A0A0B4J244 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV3A0A0B4J244 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV3A0A0B4J244 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV3A0A0B4J244 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV3A0A0B4J244 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms