Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 AC137761.2-201ENST00000561729 223 ntBASIC17.48■□□□□ 0.39
CLN6Q9NWW5 AC145350.3-201ENST00000569033 163 ntBASIC17.48■□□□□ 0.39
CLN6Q9NWW5 CYP2T3P-201ENST00000601990 817 ntBASIC17.48■□□□□ 0.39
CLN6Q9NWW5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 NOC2LP1-202ENST00000452600 2235 ntBASIC17.48■□□□□ 0.39
CLN6Q9NWW5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLN6Q9NWW5 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 NOC2LP2-201ENST00000407594 1944 ntBASIC17.47■□□□□ 0.39
CLN6Q9NWW5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 CNN2P6-201ENST00000439038 900 ntBASIC17.47■□□□□ 0.39
CLN6Q9NWW5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLN6Q9NWW5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 C2orf69P4-201ENST00000565394 541 ntBASIC17.46■□□□□ 0.39
CLN6Q9NWW5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLN6Q9NWW5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 DUX4L16-201ENST00000555130 1264 ntBASIC17.45■□□□□ 0.38
CLN6Q9NWW5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 AC069236.1-201ENST00000604339 616 ntBASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLN6Q9NWW5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLN6Q9NWW5 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLN6Q9NWW5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.44■□□□□ 0.38
CLN6Q9NWW5 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLN6Q9NWW5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLN6Q9NWW5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms