Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.589e-6■■■■□ 19.8
UPF1Q92900 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.51■□□□□ 0.554e-8■■■■□ 19.8
UPF1Q92900 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.559e-11■■■■□ 19.8
UPF1Q92900 GPATCH3-202ENST00000445019 546 ntTSL 318.45■□□□□ 0.549e-6■■■■□ 19.8
UPF1Q92900 DDX19A-213ENST00000569319 1643 ntTSL 1 (best)18.29■□□□□ 0.529e-6■■■■□ 19.8
UPF1Q92900 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.59e-6■■■■□ 19.8
UPF1Q92900 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.479e-6■■■■□ 19.8
UPF1Q92900 RPRD1B-203ENST00000462548 2436 ntTSL 517.92■□□□□ 0.462e-9■■■■□ 19.8
UPF1Q92900 C21orf33-204ENST00000419699 674 ntTSL 317.78■□□□□ 0.444e-8■■■■□ 19.8
UPF1Q92900 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.74■□□□□ 0.432e-32■■■■□ 19.8
UPF1Q92900 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.439e-6■■■■□ 19.8
UPF1Q92900 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.329e-6■■■■□ 19.8
UPF1Q92900 ITGB2-222ENST00000523323 2823 ntTSL 216.83■□□□□ 0.299e-6■■■■□ 19.8
UPF1Q92900 C1RL-208ENST00000543933 592 ntTSL 516.82■□□□□ 0.289e-11■■■■□ 19.8
UPF1Q92900 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.279e-6■■■■□ 19.8
UPF1Q92900 SMAD3-207ENST00000558763 1957 ntTSL 215.97■□□□□ 0.159e-6■■■■□ 19.8
UPF1Q92900 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.129e-7■■■■□ 19.8
UPF1Q92900 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.112e-32■■■■□ 19.8
UPF1Q92900 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.19e-6■■■■□ 19.8
UPF1Q92900 MYOM3-203ENST00000448831 418 ntTSL 315.43■□□□□ 0.069e-6■■■■□ 19.8
UPF1Q92900 C1RL-205ENST00000537833 561 ntTSL 315.41■□□□□ 0.069e-11■■■■□ 19.8
UPF1Q92900 C1RL-204ENST00000534969 532 ntTSL 315.41■□□□□ 0.069e-11■■■■□ 19.8
UPF1Q92900 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.039e-6■■■■□ 19.8
UPF1Q92900 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.22■□□□□ 0.039e-6■■■■□ 19.8
UPF1Q92900 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.039e-6■■■■□ 19.8
UPF1Q92900 KCTD2-204ENST00000579230 950 ntTSL 1 (best)14.73□□□□□ -0.059e-6■■■■□ 19.8
UPF1Q92900 RPRD1B-204ENST00000471511 571 ntTSL 414.47□□□□□ -0.099e-6■■■■□ 19.8
UPF1Q92900 TEF-202ENST00000406644 4386 ntTSL 2 BASIC14.39□□□□□ -0.119e-6■■■■□ 19.8
UPF1Q92900 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.129e-6■■■■□ 19.8
UPF1Q92900 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.159e-6■■■■□ 19.8
UPF1Q92900 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.169e-6■■■■□ 19.8
UPF1Q92900 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC13.95□□□□□ -0.189e-6■■■■□ 19.8
UPF1Q92900 TMEM167B-203ENST00000479160 897 ntTSL 313.87□□□□□ -0.197e-10■■■■□ 19.8
UPF1Q92900 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.239e-6■■■■□ 19.8
UPF1Q92900 ITGB2-212ENST00000498666 4781 ntTSL 1 (best)13.38□□□□□ -0.279e-6■■■■□ 19.8
UPF1Q92900 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.279e-6■■■■□ 19.8
UPF1Q92900 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.23□□□□□ -0.299e-6■■■■□ 19.8
UPF1Q92900 ABHD6-206ENST00000480457 386 ntTSL 313.22□□□□□ -0.299e-6■■■■□ 19.8
UPF1Q92900 NDRG2-212ENST00000403829 1500 ntTSL 2 BASIC13□□□□□ -0.339e-6■■■■□ 19.8
UPF1Q92900 RPRD1B-205ENST00000484683 554 ntTSL 312.95□□□□□ -0.349e-6■■■■□ 19.8
UPF1Q92900 RPRD1B-207ENST00000614670 659 ntTSL 312.78□□□□□ -0.366e-8■■■■□ 19.8
UPF1Q92900 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.49e-6■■■■□ 19.8
UPF1Q92900 RPRD1B-201ENST00000373433 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.436e-8■■■■□ 19.8
UPF1Q92900 IL1R1-203ENST00000409589 3544 ntTSL 5 BASIC10.76□□□□□ -0.699e-11■■■■□ 19.8
UPF1Q92900 RPRD1B-208ENST00000618318 567 ntTSL 410.4□□□□□ -0.746e-8■■■■□ 19.8
UPF1Q92900 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC8.21□□□□□ -1.19e-6■■■■□ 19.8
UPF1Q92900 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.342e-8■■■■□ 19.8
UPF1Q92900 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.262e-6■■■■□ 19.8
UPF1Q92900 MAP3K11-204ENST00000526293 571 ntTSL 422.34■■□□□ 1.179e-7■■■■□ 19.8
UPF1Q92900 MAP3K11-207ENST00000529839 561 ntTSL 420.57■□□□□ 0.889e-7■■■■□ 19.8
UPF1Q92900 MAP3K11-206ENST00000527304 5605 nt17.07■□□□□ 0.329e-7■■■■□ 19.8
UPF1Q92900 MAP3K11-203ENST00000524856 3787 ntTSL 214.49□□□□□ -0.099e-7■■■■□ 19.8
UPF1Q92900 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC33.23■■■□□ 2.912e-8■■■■□ 19.8
UPF1Q92900 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.112e-8■■■■□ 19.8
UPF1Q92900 HGS-203ENST00000570652 523 ntTSL 526.23■■□□□ 1.799e-11■■■■□ 19.8
UPF1Q92900 HGS-210ENST00000573320 547 ntTSL 321.16■□□□□ 0.989e-11■■■■□ 19.8
UPF1Q92900 HGS-211ENST00000573949 461 ntTSL 518.18■□□□□ 0.59e-11■■■■□ 19.8
UPF1Q92900 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.329e-11■■■■□ 19.8
UPF1Q92900 MTR-205ENST00000535889 10405 ntTSL 1 (best) BASIC10.93□□□□□ -0.663e-7■■■■□ 19.8
UPF1Q92900 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.73e-7■■■■□ 19.8
UPF1Q92900 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.8■□□□□ 0.922e-7■■■■□ 19.8
UPF1Q92900 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC28.01■■■□□ 2.083e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.54■■□□□ 1.683e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.613e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.33e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-206ENST00000504118 441 ntTSL 211.99□□□□□ -0.493e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-208ENST00000506102 2351 ntTSL 210.74□□□□□ -0.693e-6■■■■□ 19.8
UPF1Q92900 SLC41A3-216ENST00000512557 3828 ntTSL 210.05□□□□□ -0.83e-6■■■■□ 19.8
UPF1Q92900 FLNA-217ENST00000498411 368 ntTSL 318.83■□□□□ 0.63e-38■■■■□ 19.8
UPF1Q92900 FLNA-216ENST00000490936 5374 ntTSL 1 (best)15.76■□□□□ 0.113e-38■■■■□ 19.8
UPF1Q92900 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.23e-38■■■■□ 19.8
UPF1Q92900 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.33e-38■■■■□ 19.8
UPF1Q92900 FLNA-206ENST00000420627 8225 ntTSL 512.91□□□□□ -0.343e-38■■■■□ 19.8
UPF1Q92900 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.423e-38■■■■□ 19.8
UPF1Q92900 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.443e-38■■■■□ 19.8
UPF1Q92900 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.533e-38■■■■□ 19.8
UPF1Q92900 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC11.56□□□□□ -0.563e-38■■■■□ 19.8
UPF1Q92900 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.953e-26■■■■□ 19.8
UPF1Q92900 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.649e-7■■■■□ 19.8
UPF1Q92900 STAR-202ENST00000520114 3448 ntTSL 29.92□□□□□ -0.829e-7■■■■□ 19.8
UPF1Q92900 CPTP-202ENST00000464957 1101 ntTSL 245.33■■■■■ 4.852e-7■■■■□ 19.8
UPF1Q92900 NUP62-201ENST00000352066 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.396e-7■■■■□ 19.8
UPF1Q92900 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.463e-6■■■■□ 19.8
UPF1Q92900 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.843e-6■■■■□ 19.8
UPF1Q92900 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.97■□□□□ 0.473e-6■■■■□ 19.8
UPF1Q92900 AC092073.1-201ENST00000592740 625 ntAPPRIS P1 TSL 323.47■■□□□ 1.354e-8■■■■□ 19.8
UPF1Q92900 KIFC3-216ENST00000564136 3071 ntTSL 214.19□□□□□ -0.144e-7■■■■□ 19.8
UPF1Q92900 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.19□□□□□ -0.34e-7■■■■□ 19.8
UPF1Q92900 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.941e-8■■■■□ 19.8
UPF1Q92900 DDA1-202ENST00000593466 757 ntTSL 327■■□□□ 1.913e-7■■■■□ 19.8
UPF1Q92900 DDA1-204ENST00000596582 502 ntTSL 326.73■■□□□ 1.873e-7■■■■□ 19.8
UPF1Q92900 CNBP-206ENST00000502372 1026 ntTSL 516.64■□□□□ 0.257e-9■■■■□ 19.8
UPF1Q92900 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.84■■■□□ 2.853e-10■■■■□ 19.8
UPF1Q92900 RNF215-201ENST00000215798 1651 ntAPPRIS ALT2 TSL 521.93■■□□□ 1.13e-10■■■■□ 19.8
UPF1Q92900 RNF215-204ENST00000421022 361 ntTSL 219.01■□□□□ 0.633e-10■■■■□ 19.8
UPF1Q92900 RNF215-210ENST00000631046 468 ntTSL 218.9■□□□□ 0.623e-10■■■■□ 19.8
UPF1Q92900 RNF215-209ENST00000630264 534 ntTSL 216.8■□□□□ 0.283e-10■■■■□ 19.8
UPF1Q92900 RNF215-202ENST00000332468 8141 ntTSL 511.29□□□□□ -0.63e-10■■■■□ 19.8
UPF1Q92900 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.19e-8■■■■□ 19.8
UPF1Q92900 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.687e-7■■■■□ 19.8
Retrieved 100 of 15,879 protein–RNA pairs in 150 ms