Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.5■□□□□ 0.398e-7■■□□□ 14.4
YBX3P16989 HIPK2-203ENST00000428878 3969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.455e-9■■□□□ 14.4
YBX3P16989 HIPK2-201ENST00000342645 2937 ntTSL 5 BASIC9.15□□□□□ -0.955e-9■■□□□ 14.4
YBX3P16989 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.144e-18■■□□□ 14.4
YBX3P16989 USMG5-202ENST00000337003 560 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.014e-18■■□□□ 14.4
YBX3P16989 USMG5-204ENST00000369815 626 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.184e-18■■□□□ 14.4
YBX3P16989 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.24e-18■■□□□ 14.4
YBX3P16989 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.454e-18■■□□□ 14.4
YBX3P16989 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.561e-22■■□□□ 14.4
YBX3P16989 HNRNPU-217ENST00000638952 5678 ntTSL 517.42■□□□□ 0.381e-13■■□□□ 14.4
YBX3P16989 HNRNPU-228ENST00000640306 2917 ntTSL 517.12■□□□□ 0.331e-13■■□□□ 14.4
YBX3P16989 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.261e-13■■□□□ 14.4
YBX3P16989 HNRNPU-209ENST00000476241 4844 ntTSL 516.44■□□□□ 0.221e-13■■□□□ 14.4
YBX3P16989 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.131e-13■■□□□ 14.4
YBX3P16989 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -01e-13■■□□□ 14.4
YBX3P16989 PCBP2-210ENST00000547859 1919 ntTSL 212.45□□□□□ -0.424e-34■■□□□ 14.4
YBX3P16989 PCBP2-214ENST00000549272 445 ntTSL 26.63□□□□□ -1.354e-34■■□□□ 14.4
YBX3P16989 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.473e-14■■□□□ 14.4
YBX3P16989 RAD23A-208ENST00000591499 1350 ntTSL 227.49■■□□□ 1.998e-12■■□□□ 14.4
YBX3P16989 SBNO1-203ENST00000602398 4313 ntAPPRIS ALT1 TSL 5 BASIC9.88□□□□□ -0.839e-9■■□□□ 14.4
YBX3P16989 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.389e-9■■□□□ 14.4
YBX3P16989 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.419e-9■■□□□ 14.4
YBX3P16989 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.762e-6■■□□□ 14.4
YBX3P16989 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.31■■□□□ 12e-6■■□□□ 14.4
YBX3P16989 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.792e-6■■□□□ 14.4
YBX3P16989 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.717e-10■■□□□ 14.4
YBX3P16989 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.8■□□□□ 0.447e-10■■□□□ 14.4
YBX3P16989 MTIF2-205ENST00000404297 437 ntTSL 213.26□□□□□ -0.292e-9■■□□□ 14.4
YBX3P16989 MTIF2-208ENST00000417741 658 ntTSL 39.82□□□□□ -0.842e-9■■□□□ 14.4
YBX3P16989 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.012e-9■■□□□ 14.4
YBX3P16989 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.317e-57■■□□□ 14.4
YBX3P16989 PCBD1-202ENST00000493228 732 ntTSL 221.6■■□□□ 1.053e-7■■□□□ 14.4
YBX3P16989 ST6GAL1-214ENST00000455441 596 ntTSL 427.31■■□□□ 1.967e-7■■□□□ 14.4
YBX3P16989 ST6GAL1-205ENST00000427315 544 ntTSL 426.96■■□□□ 1.917e-7■■□□□ 14.4
YBX3P16989 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.641e-6■■□□□ 14.4
YBX3P16989 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC7.51□□□□□ -1.214e-8■■□□□ 14.4
YBX3P16989 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.78□□□□□ -1.484e-8■■□□□ 14.4
YBX3P16989 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.824e-8■■□□□ 14.4
YBX3P16989 CFAP97-204ENST00000503223 682 ntTSL 230.9■■■□□ 2.542e-8■■□□□ 14.4
YBX3P16989 MTX1-203ENST00000424959 946 ntTSL 524.73■■□□□ 1.556e-12■■□□□ 14.4
YBX3P16989 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.29■■□□□ 1.486e-12■■□□□ 14.4
YBX3P16989 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.269e-7■■□□□ 14.4
YBX3P16989 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC22.35■■□□□ 1.176e-12■■□□□ 14.4
YBX3P16989 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.112e-8■■□□□ 14.4
YBX3P16989 MTX1-206ENST00000495589 935 ntTSL 521.49■■□□□ 1.036e-12■■□□□ 14.4
YBX3P16989 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.036e-12■■□□□ 14.4
YBX3P16989 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 12e-8■■□□□ 14.4
YBX3P16989 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20■□□□□ 0.793e-6■■□□□ 14.4
YBX3P16989 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.96■□□□□ 0.799e-7■■□□□ 14.4
YBX3P16989 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.582e-8■■□□□ 14.4
YBX3P16989 GRN-206ENST00000586782 843 ntTSL 518.64■□□□□ 0.573e-6■■□□□ 14.4
YBX3P16989 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.52■□□□□ 0.562e-8■■□□□ 14.4
YBX3P16989 OSBPL9-225ENST00000533884 595 ntTSL 418.23■□□□□ 0.512e-15■■□□□ 14.4
YBX3P16989 OSBPL9-209ENST00000473207 578 ntTSL 418.23■□□□□ 0.512e-15■■□□□ 14.4
YBX3P16989 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC17.01■□□□□ 0.319e-7■■□□□ 14.4
YBX3P16989 OSBPL9-217ENST00000526917 663 ntTSL 316.88■□□□□ 0.292e-15■■□□□ 14.4
YBX3P16989 GRN-217ENST00000590984 562 ntTSL 216.72■□□□□ 0.273e-6■■□□□ 14.4
YBX3P16989 MTX1-204ENST00000481771 2579 ntTSL 216.46■□□□□ 0.236e-12■■□□□ 14.4
YBX3P16989 MND1-205ENST00000509752 844 ntTSL 315.8■□□□□ 0.122e-8■■□□□ 14.4
YBX3P16989 SNF8-203ENST00000504000 1899 ntTSL 215.18■□□□□ 0.022e-6■■□□□ 14.4
YBX3P16989 SNF8-215ENST00000515572 687 ntTSL 214.98□□□□□ -0.012e-6■■□□□ 14.4
YBX3P16989 MND1-206ENST00000622785 830 ntTSL 2 BASIC12.82□□□□□ -0.362e-8■■□□□ 14.4
YBX3P16989 RPS27AP16-202ENST00000591758 566 ntBASIC12.81□□□□□ -0.362e-8■■□□□ 14.4
YBX3P16989 MND1-204ENST00000508731 502 ntTSL 312.68□□□□□ -0.382e-8■■□□□ 14.4
YBX3P16989 MND1-201ENST00000240488 968 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.392e-8■■□□□ 14.4
YBX3P16989 ACACA-243ENST00000618575 772 ntTSL 410.26□□□□□ -0.772e-8■■□□□ 14.4
YBX3P16989 HDAC1-204ENST00000471488 726 ntTSL 59.93□□□□□ -0.823e-6■■□□□ 14.4
YBX3P16989 OSBPL9-218ENST00000527631 563 ntTSL 48.61□□□□□ -1.032e-15■■□□□ 14.4
YBX3P16989 OSBPL9-226ENST00000534040 575 ntTSL 48.46□□□□□ -1.062e-15■■□□□ 14.4
YBX3P16989 OSBPL9-223ENST00000532975 581 ntTSL 48.46□□□□□ -1.062e-15■■□□□ 14.4
YBX3P16989 RPS27AP16-201ENST00000492222 470 ntBASIC6.49□□□□□ -1.372e-8■■□□□ 14.4
YBX3P16989 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC6.38□□□□□ -1.392e-8■■□□□ 14.4
YBX3P16989 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.24□□□□□ -1.419e-7■■□□□ 14.4
YBX3P16989 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.569e-7■■□□□ 14.4
YBX3P16989 UGP2-211ENST00000475550 4397 ntTSL 1 (best)5.13□□□□□ -1.599e-7■■□□□ 14.4
YBX3P16989 NUP205-210ENST00000607647 4518 ntTSL 56.44□□□□□ -1.382e-7■■□□□ 14.4
YBX3P16989 RPLP0-209ENST00000547211 781 ntTSL 314.89□□□□□ -0.031e-88■■□□□ 14.4
YBX3P16989 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.62■□□□□ 0.734e-6■■□□□ 14.4
YBX3P16989 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.064e-6■■□□□ 14.4
YBX3P16989 LETMD1-202ENST00000380135 1566 ntTSL 320.87■□□□□ 0.935e-13■■□□□ 14.4
YBX3P16989 LETMD1-220ENST00000549686 563 ntTSL 220.81■□□□□ 0.925e-13■■□□□ 14.4
YBX3P16989 LETMD1-210ENST00000547555 1658 ntTSL 519.8■□□□□ 0.765e-13■■□□□ 14.4
YBX3P16989 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.17■□□□□ 0.55e-13■■□□□ 14.4
YBX3P16989 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.13■□□□□ 0.495e-13■■□□□ 14.4
YBX3P16989 LETMD1-212ENST00000547877 2020 ntTSL 518.05■□□□□ 0.485e-13■■□□□ 14.4
YBX3P16989 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.415e-13■■□□□ 14.4
YBX3P16989 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.64■□□□□ 0.415e-13■■□□□ 14.4
YBX3P16989 LETMD1-222ENST00000550274 809 ntTSL 217.52■□□□□ 0.45e-13■■□□□ 14.4
YBX3P16989 LETMD1-231ENST00000551931 705 ntTSL 317.52■□□□□ 0.45e-13■■□□□ 14.4
YBX3P16989 LETMD1-221ENST00000550100 1480 ntTSL 215.69■□□□□ 0.15e-13■■□□□ 14.4
YBX3P16989 LETMD1-209ENST00000547318 2001 ntTSL 1 (best)14.86□□□□□ -0.035e-13■■□□□ 14.4
YBX3P16989 LETMD1-217ENST00000548516 850 ntTSL 513.14□□□□□ -0.315e-13■■□□□ 14.4
YBX3P16989 LETMD1-234ENST00000552645 1623 ntTSL 1 (best)12.55□□□□□ -0.45e-13■■□□□ 14.4
YBX3P16989 LETMD1-228ENST00000550929 1389 ntTSL 1 (best) BASIC12.34□□□□□ -0.435e-13■■□□□ 14.4
YBX3P16989 LETMD1-219ENST00000549395 475 ntTSL 311.26□□□□□ -0.615e-13■■□□□ 14.4
YBX3P16989 LETMD1-236ENST00000553043 727 ntTSL 210.12□□□□□ -0.795e-13■■□□□ 14.4
YBX3P16989 LETMD1-208ENST00000547256 618 ntTSL 210.12□□□□□ -0.795e-13■■□□□ 14.4
YBX3P16989 LETMD1-204ENST00000546814 894 ntTSL 29.61□□□□□ -0.875e-13■■□□□ 14.4
YBX3P16989 LETMD1-238ENST00000623495 2948 nt8.86□□□□□ -0.995e-13■■□□□ 14.4
YBX3P16989 COPS3-216ENST00000579716 419 ntTSL 27.95□□□□□ -1.141e-9■■□□□ 14.4
Retrieved 100 of 29,075 protein–RNA pairs in 460.6 ms