RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.37
HDAC1-204ENST00000471488 ABCC9O60706 1549 aa16.22■□□□□ 0.19
HDAC1-204ENST00000471488 CCDC180Q9P1Z9 1646 aa15.7■□□□□ 0.1
HDAC1-204ENST00000471488 DNAJC5BQ9UF47 199 aa15.45■□□□□ 0.06
HDAC1-204ENST00000471488 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
HDAC1-204ENST00000471488 DCAF8L2P0C7V8 631 aa15.14■□□□□ 0.01
HDAC1-204ENST00000471488 PABPN1Q86U42 306 aaKnown RBP eCLIP15.1■□□□□ 0.01
HDAC1-204ENST00000471488 NACADO15069 1562 aa14.94□□□□□ -0.02
HDAC1-204ENST00000471488 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
HDAC1-204ENST00000471488 BICRAQ9NZM4 1560 aa14.7□□□□□ -0.06
HDAC1-204ENST00000471488 CECR2Q9BXF3 1484 aa14.59□□□□□ -0.07
HDAC1-204ENST00000471488 CC2D2AQ9P2K1 1620 aa14.55□□□□□ -0.08
HDAC1-204ENST00000471488 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
HDAC1-204ENST00000471488 SCRIBQ14160 1630 aa14.46□□□□□ -0.09
HDAC1-204ENST00000471488 EIF4G1Q04637 1599 aaKnown RBP14.42□□□□□ -0.1
HDAC1-204ENST00000471488 DNAJC5Q9H3Z4 198 aa14.41□□□□□ -0.1
HDAC1-204ENST00000471488 SHROOM4Q9ULL8 1493 aa14.38□□□□□ -0.11
HDAC1-204ENST00000471488 ZCCHC6Q5VYS8 1495 aaKnown RBP14.32□□□□□ -0.12
HDAC1-204ENST00000471488 DCAF1Q9Y4B6 1507 aa14.24□□□□□ -0.13
HDAC1-204ENST00000471488 ERCC6Q03468 1493 aa14.06□□□□□ -0.16
HDAC1-204ENST00000471488 CUX2O14529 1486 aa13.99□□□□□ -0.17
HDAC1-204ENST00000471488 TRIM41Q8WV44 630 aa13.85□□□□□ -0.19
HDAC1-204ENST00000471488 NESP48681 1621 aa13.81□□□□□ -0.2
HDAC1-204ENST00000471488 NCAPD3P42695 1498 aa13.79□□□□□ -0.2
HDAC1-204ENST00000471488 ATAD2BQ9ULI0 1458 aa13.74□□□□□ -0.21
HDAC1-204ENST00000471488 SMARCA2P51531 1590 aa13.7□□□□□ -0.22
HDAC1-204ENST00000471488 BAZ1BQ9UIG0 1483 aaKnown RBP13.67□□□□□ -0.22
HDAC1-204ENST00000471488 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
HDAC1-204ENST00000471488 SMARCA4P51532 1647 aa13.66□□□□□ -0.22
HDAC1-204ENST00000471488 THOC2Q8NI27 1593 aaKnown RBP13.64□□□□□ -0.23
HDAC1-204ENST00000471488 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
HDAC1-204ENST00000471488 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
HDAC1-204ENST00000471488 PDS5BQ9NTI5 1447 aa13.56□□□□□ -0.24
HDAC1-204ENST00000471488 BAZ1AQ9NRL2 1556 aaPredicted RBP13.54□□□□□ -0.24
HDAC1-204ENST00000471488 MRC2Q9UBG0 1479 aa13.45□□□□□ -0.26
HDAC1-204ENST00000471488 MROH2BQ7Z745 1585 aa13.44□□□□□ -0.26
HDAC1-204ENST00000471488 PEG3Q9GZU2 1588 aa13.42□□□□□ -0.26
HDAC1-204ENST00000471488 CADPSQ9ULU8 1353 aa13.42□□□□□ -0.26
HDAC1-204ENST00000471488 OSCARQ8IYS5 282 aa13.4□□□□□ -0.26
HDAC1-204ENST00000471488 WDR62O43379 1518 aa13.37□□□□□ -0.27
HDAC1-204ENST00000471488 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
HDAC1-204ENST00000471488 FANCD2Q9BXW9 1451 aa13.3□□□□□ -0.28
HDAC1-204ENST00000471488 WIZO95785 1651 aa13.3□□□□□ -0.28
HDAC1-204ENST00000471488 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
HDAC1-204ENST00000471488 RIMBP3CA6NJZ7 1639 aa13.22□□□□□ -0.29
HDAC1-204ENST00000471488 RIMBP3BA6NNM3 1639 aa13.22□□□□□ -0.29
HDAC1-204ENST00000471488 RIMBP3Q9UFD9 1639 aa13.22□□□□□ -0.29
HDAC1-204ENST00000471488 URB2Q14146 1524 aaKnown RBP13.18□□□□□ -0.3
HDAC1-204ENST00000471488 CYB5RLQ6IPT4 315 aa13.18□□□□□ -0.3
HDAC1-204ENST00000471488 CFTRP13569 1480 aa13.15□□□□□ -0.3
HDAC1-204ENST00000471488 ARHGEF11O15085 1522 aa13.13□□□□□ -0.31
HDAC1-204ENST00000471488 ZNF608Q9ULD9 1512 aaPredicted RBP13.12□□□□□ -0.31
HDAC1-204ENST00000471488 FBLN2P98095 1184 aa13.11□□□□□ -0.31
HDAC1-204ENST00000471488 AEBP2Q6ZN18 517 aaPredicted RBP13.09□□□□□ -0.31
HDAC1-204ENST00000471488 IFT140Q96RY7 1462 aa13.06□□□□□ -0.32
HDAC1-204ENST00000471488 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
HDAC1-204ENST00000471488 RSF1Q96T23 1441 aaPredicted RBP13.03□□□□□ -0.32
HDAC1-204ENST00000471488 EIF4G3O43432 1585 aaKnown RBP13.01□□□□□ -0.33
HDAC1-204ENST00000471488 CHD1O14646 1710 aa12.99□□□□□ -0.33
HDAC1-204ENST00000471488 PRDM2Q13029 1718 aa12.99□□□□□ -0.33
HDAC1-204ENST00000471488 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
HDAC1-204ENST00000471488 ARAP1Q96P48 1450 aa12.98□□□□□ -0.33
HDAC1-204ENST00000471488 AQRO60306 1485 aaKnown RBP eCLIP12.97□□□□□ -0.332e-9■■■■■ 54.1
HDAC1-204ENST00000471488 CCDC88BA6NC98 1476 aa12.94□□□□□ -0.34
HDAC1-204ENST00000471488 ABCC8Q09428 1581 aa12.9□□□□□ -0.35
HDAC1-204ENST00000471488 DNMBPQ6XZF7 1577 aa12.9□□□□□ -0.35
HDAC1-204ENST00000471488 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
HDAC1-204ENST00000471488 CHMP7Q8WUX9 453 aaPredicted RBP12.87□□□□□ -0.35
HDAC1-204ENST00000471488 RAD54L2Q9Y4B4 1467 aa12.85□□□□□ -0.35
HDAC1-204ENST00000471488 TARBP1Q13395 1621 aaKnown RBP12.85□□□□□ -0.35
HDAC1-204ENST00000471488 POLA1P09884 1462 aaPredicted RBP12.83□□□□□ -0.36
HDAC1-204ENST00000471488 SNAPC4Q5SXM2 1469 aa12.83□□□□□ -0.36
HDAC1-204ENST00000471488 SOGA1O94964 1423 aa12.81□□□□□ -0.36
HDAC1-204ENST00000471488 SYNJ1O43426 1573 aa12.78□□□□□ -0.36
HDAC1-204ENST00000471488 CLASP1Q7Z460 1538 aa12.76□□□□□ -0.37
HDAC1-204ENST00000471488 FGD5Q6ZNL6 1462 aa12.74□□□□□ -0.37
HDAC1-204ENST00000471488 GAPVD1Q14C86 1478 aa12.72□□□□□ -0.37
HDAC1-204ENST00000471488 GRIN2BQ13224 1484 aa12.71□□□□□ -0.38
HDAC1-204ENST00000471488 MAGI1Q96QZ7 1491 aaPredicted RBP12.71□□□□□ -0.38
HDAC1-204ENST00000471488 SYNJ2O15056 1496 aa12.7□□□□□ -0.38
HDAC1-204ENST00000471488 PBRM1Q86U86 1689 aa12.64□□□□□ -0.39
HDAC1-204ENST00000471488 CUX1P39880 1505 aa12.64□□□□□ -0.39
HDAC1-204ENST00000471488 WDR97A6NE52 1622 aa12.64□□□□□ -0.39
HDAC1-204ENST00000471488 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
HDAC1-204ENST00000471488 GRIN2AQ12879 1464 aa12.54□□□□□ -0.4
HDAC1-204ENST00000471488 CEP170Q5SW79 1584 aa12.54□□□□□ -0.4
HDAC1-204ENST00000471488 FAM69CQ0P6D2 419 aa12.52□□□□□ -0.41
HDAC1-204ENST00000471488 ABCA5Q8WWZ7 1642 aa12.51□□□□□ -0.41
HDAC1-204ENST00000471488 NPM1P06748 294 aaKnown RBP eCLIP12.51□□□□□ -0.41
HDAC1-204ENST00000471488 ABCA10Q8WWZ4 1543 aa12.5□□□□□ -0.41
HDAC1-204ENST00000471488 KIF13AQ9H1H9 1805 aa12.48□□□□□ -0.41
HDAC1-204ENST00000471488 ADAMTS12P58397 1594 aa12.47□□□□□ -0.41
HDAC1-204ENST00000471488 PRG4Q92954 1404 aaPredicted RBP12.47□□□□□ -0.41
HDAC1-204ENST00000471488 NUP160Q12769 1436 aa12.45□□□□□ -0.42
HDAC1-204ENST00000471488 WRNQ14191 1432 aaPredicted RBP eCLIP12.45□□□□□ -0.42
HDAC1-204ENST00000471488 TTBK1Q5TCY1 1321 aaPredicted RBP12.45□□□□□ -0.42
HDAC1-204ENST00000471488 ILDR1Q86SU0 546 aaPredicted RBP12.45□□□□□ -0.42
HDAC1-204ENST00000471488 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
HDAC1-204ENST00000471488 FHAD1B1AJZ9 1412 aa12.44□□□□□ -0.42
HDAC1-204ENST00000471488 JPH4Q96JJ6 628 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms