RNA–Protein interactions for RNA: ENST00000504000.1

SNF8-203, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 2

Gene SNF8, Length 1,899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-203ENST00000504000 NISCHQ9Y2I1 1504 aa30.72■■■□□ 2.51
SNF8-203ENST00000504000 CCDC180Q9P1Z9 1646 aa26.15■■□□□ 1.78
SNF8-203ENST00000504000 ZCCHC6Q5VYS8 1495 aaKnown RBP26.05■■□□□ 1.76
SNF8-203ENST00000504000 SHROOM4Q9ULL8 1493 aa25.9■■□□□ 1.74
SNF8-203ENST00000504000 SUPT5HO00267 1087 aaKnown RBP25.56■■□□□ 1.68
SNF8-203ENST00000504000 DCAF1Q9Y4B6 1507 aa25.41■■□□□ 1.66
SNF8-203ENST00000504000 CHIC1Q5VXU3 224 aa25.15■■□□□ 1.62
SNF8-203ENST00000504000 MYO15BQ96JP2 1530 aa25.01■■□□□ 1.59
SNF8-203ENST00000504000 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
SNF8-203ENST00000504000 HRCP23327 699 aa24.75■■□□□ 1.55
SNF8-203ENST00000504000 ABCC9O60706 1549 aa24.61■■□□□ 1.53
SNF8-203ENST00000504000 PCGF6Q9BYE7 350 aa24.43■■□□□ 1.5
SNF8-203ENST00000504000 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
SNF8-203ENST00000504000 SCRIBQ14160 1630 aa24.23■■□□□ 1.47
SNF8-203ENST00000504000 LOC105371045A0A1W2PR82 267 aa24.23■■□□□ 1.47
SNF8-203ENST00000504000 RB1CC1Q8TDY2 1594 aa24.18■■□□□ 1.46
SNF8-203ENST00000504000 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
SNF8-203ENST00000504000 NACADO15069 1562 aa24.1■■□□□ 1.45
SNF8-203ENST00000504000 TRIM41Q8WV44 630 aa23.95■■□□□ 1.42
SNF8-203ENST00000504000 PPARGC1BQ86YN6 1023 aaKnown RBP23.91■■□□□ 1.42
SNF8-203ENST00000504000 ZEB1P37275 1124 aaPredicted RBP23.83■■□□□ 1.4
SNF8-203ENST00000504000 CECR2Q9BXF3 1484 aa23.78■■□□□ 1.4
SNF8-203ENST00000504000 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
SNF8-203ENST00000504000 BAZ1AQ9NRL2 1556 aaPredicted RBP23.66■■□□□ 1.38
SNF8-203ENST00000504000 WIZO95785 1651 aa23.63■■□□□ 1.37
SNF8-203ENST00000504000 EIF4G1Q04637 1599 aaKnown RBP23.57■■□□□ 1.36
SNF8-203ENST00000504000 FAM9AQ8IZU1 332 aaPredicted RBP23.53■■□□□ 1.36
SNF8-203ENST00000504000 TOP2AP11388 1531 aaKnown RBP23.41■■□□□ 1.34
SNF8-203ENST00000504000 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
SNF8-203ENST00000504000 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
SNF8-203ENST00000504000 SMARCA2P51531 1590 aa23.24■■□□□ 1.31
SNF8-203ENST00000504000 CCDC88BA6NC98 1476 aa23.23■■□□□ 1.31
SNF8-203ENST00000504000 EEA1Q15075 1411 aa23.17■■□□□ 1.3
SNF8-203ENST00000504000 UNC13AQ9UPW8 1703 aa23.15■■□□□ 1.3
SNF8-203ENST00000504000 EHMT2Q96KQ7 1210 aa23.12■■□□□ 1.29
SNF8-203ENST00000504000 ABCC8Q09428 1581 aa23.11■■□□□ 1.29
SNF8-203ENST00000504000 TNIKQ9UKE5 1360 aa23.09■■□□□ 1.29
SNF8-203ENST00000504000 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
SNF8-203ENST00000504000 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
SNF8-203ENST00000504000 SOGA1O94964 1423 aa22.97■■□□□ 1.27
SNF8-203ENST00000504000 CCER1Q8TC90 406 aaPredicted RBP22.94■■□□□ 1.26
SNF8-203ENST00000504000 CSRNP3Q8WYN3 585 aa22.94■■□□□ 1.26
SNF8-203ENST00000504000 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.9■■□□□ 1.26
SNF8-203ENST00000504000 BICRAQ9NZM4 1560 aa22.9■■□□□ 1.26
SNF8-203ENST00000504000 PELP1Q8IZL8 1130 aaKnown RBP22.9■■□□□ 1.26
SNF8-203ENST00000504000 GOLGA3Q08378 1498 aa22.89■■□□□ 1.25
SNF8-203ENST00000504000 RUSC2Q8N2Y8 1516 aa22.8■■□□□ 1.24
SNF8-203ENST00000504000 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
SNF8-203ENST00000504000 KIF21BO75037 1637 aa22.78■■□□□ 1.24
SNF8-203ENST00000504000 CEP164Q9UPV0 1460 aa22.77■■□□□ 1.23
SNF8-203ENST00000504000 UBTFP17480 764 aaKnown RBP22.73■■□□□ 1.23
SNF8-203ENST00000504000 SYNJ1O43426 1573 aa22.68■■□□□ 1.22
SNF8-203ENST00000504000 BAZ1BQ9UIG0 1483 aaKnown RBP22.68■■□□□ 1.22
SNF8-203ENST00000504000 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
SNF8-203ENST00000504000 DIEXFQ68CQ4 756 aaKnown RBP22.65■■□□□ 1.22
SNF8-203ENST00000504000 ACIN1Q9UKV3 1341 aaKnown RBP22.64■■□□□ 1.21
SNF8-203ENST00000504000 PABPN1Q86U42 306 aaKnown RBP eCLIP22.6■■□□□ 1.215e-8■■■□□ 16.1
SNF8-203ENST00000504000 CLIP1P30622 1438 aa22.57■■□□□ 1.2
SNF8-203ENST00000504000 VPS8Q8N3P4 1428 aa22.57■■□□□ 1.2
SNF8-203ENST00000504000 CENPBP07199 599 aaPredicted RBP22.54■■□□□ 1.2
SNF8-203ENST00000504000 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
SNF8-203ENST00000504000 ZNF316A6NFI3 1004 aaPredicted RBP22.49■■□□□ 1.19
SNF8-203ENST00000504000 NEUROD1Q13562 356 aa22.48■■□□□ 1.19
SNF8-203ENST00000504000 TTBK1Q5TCY1 1321 aaPredicted RBP22.48■■□□□ 1.19
SNF8-203ENST00000504000 RAPGEF2Q9Y4G8 1499 aa22.44■■□□□ 1.18
SNF8-203ENST00000504000 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
SNF8-203ENST00000504000 ERICH3Q5RHP9 1530 aa22.42■■□□□ 1.18
SNF8-203ENST00000504000 APLP2Q06481 763 aa22.36■■□□□ 1.17
SNF8-203ENST00000504000 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
SNF8-203ENST00000504000 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
SNF8-203ENST00000504000 CLSPNQ9HAW4 1339 aa22.32■■□□□ 1.16
SNF8-203ENST00000504000 NCAPD3P42695 1498 aa22.28■■□□□ 1.16
SNF8-203ENST00000504000 GTF3C3Q9Y5Q9 886 aa22.27■■□□□ 1.16
SNF8-203ENST00000504000 HNRNPUL2Q1KMD3 747 aaKnown RBP22.26■■□□□ 1.15
SNF8-203ENST00000504000 ARAP1Q96P48 1450 aa22.19■■□□□ 1.14
SNF8-203ENST00000504000 KIF27Q86VH2 1401 aa22.15■■□□□ 1.14
SNF8-203ENST00000504000 CUX1P39880 1505 aa22.14■■□□□ 1.14
SNF8-203ENST00000504000 CFTRP13569 1480 aa22.13■■□□□ 1.13
SNF8-203ENST00000504000 RRBP1Q9P2E9 1410 aaKnown RBP22.12■■□□□ 1.13
SNF8-203ENST00000504000 CUX2O14529 1486 aa22.09■■□□□ 1.13
SNF8-203ENST00000504000 DHX57Q6P158 1386 aaKnown RBP22.08■■□□□ 1.13
SNF8-203ENST00000504000 MIER1Q8N108 512 aa22.07■■□□□ 1.12
SNF8-203ENST00000504000 PRDM2Q13029 1718 aa22■■□□□ 1.11
SNF8-203ENST00000504000 MAP3K1Q13233 1512 aa21.98■■□□□ 1.11
SNF8-203ENST00000504000 ARHGAP35Q9NRY4 1499 aa21.98■■□□□ 1.11
SNF8-203ENST00000504000 KANK4Q5T7N3 995 aaPredicted RBP21.98■■□□□ 1.11
SNF8-203ENST00000504000 RANGAP1P46060 587 aaPredicted RBP21.95■■□□□ 1.1
SNF8-203ENST00000504000 CCNB3Q8WWL7 1395 aa21.93■■□□□ 1.1
SNF8-203ENST00000504000 YTHDC1Q96MU7 727 aaKnown RBP21.89■■□□□ 1.09
SNF8-203ENST00000504000 MYT1Q01538 1121 aa21.86■■□□□ 1.09
SNF8-203ENST00000504000 IGF1RP08069 1367 aa21.86■■□□□ 1.09
SNF8-203ENST00000504000 TIAM1Q13009 1591 aa21.82■■□□□ 1.08
SNF8-203ENST00000504000 CADPSQ9ULU8 1353 aa21.79■■□□□ 1.08
SNF8-203ENST00000504000 CARMIL1Q5VZK9 1371 aa21.75■■□□□ 1.07
SNF8-203ENST00000504000 FHAD1B1AJZ9 1412 aa21.73■■□□□ 1.07
SNF8-203ENST00000504000 LRRC9Q6ZRR7 1453 aa21.73■■□□□ 1.07
SNF8-203ENST00000504000 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
SNF8-203ENST00000504000 RAB3GAP2Q9H2M9 1393 aa21.7■■□□□ 1.06
SNF8-203ENST00000504000 MAPKBP1O60336 1514 aa21.69■■□□□ 1.06
SNF8-203ENST00000504000 CFAP43Q8NDM7 1665 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 258.6 ms