Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 UNC93B2-201ENST00000285383 730 ntBASIC13.34□□□□□ -0.27
UPK3BQ9BT76 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 RPS20-210ENST00000523936 899 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 DGCR10-201ENST00000609839 495 ntBASIC13.34□□□□□ -0.27
UPK3BQ9BT76 REXO1L10P-201ENST00000615707 1290 ntBASIC13.34□□□□□ -0.27
UPK3BQ9BT76 REXO1L12P-201ENST00000622156 912 ntBASIC13.34□□□□□ -0.27
UPK3BQ9BT76 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
UPK3BQ9BT76 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
UPK3BQ9BT76 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
UPK3BQ9BT76 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
UPK3BQ9BT76 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
UPK3BQ9BT76 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 AC004980.1-204ENST00000429707 299 ntBASIC13.33□□□□□ -0.28
UPK3BQ9BT76 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UPK3BQ9BT76 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 RBM17P1-201ENST00000453646 1190 ntBASIC13.32□□□□□ -0.28
UPK3BQ9BT76 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC13.32□□□□□ -0.28
UPK3BQ9BT76 LINC01023-201ENST00000606054 436 ntBASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms