RNA–Protein interactions for RNA: ENST00000474289.6

ECHDC1-214, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 2,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-214ENST00000474289 NISCHQ9Y2I1 1504 aa36.12■■■■□ 3.37
ECHDC1-214ENST00000474289 HRCP23327 699 aa31.5■■■□□ 2.63
ECHDC1-214ENST00000474289 SHROOM4Q9ULL8 1493 aa31.41■■■□□ 2.62
ECHDC1-214ENST00000474289 SUPT5HO00267 1087 aaKnown RBP31.17■■■□□ 2.58
ECHDC1-214ENST00000474289 MYO15BQ96JP2 1530 aa30.96■■■□□ 2.55
ECHDC1-214ENST00000474289 PCGF6Q9BYE7 350 aa30.86■■■□□ 2.53
ECHDC1-214ENST00000474289 PPARGC1BQ86YN6 1023 aaKnown RBP30.79■■■□□ 2.52
ECHDC1-214ENST00000474289 CHIC1Q5VXU3 224 aa30.72■■■□□ 2.51
ECHDC1-214ENST00000474289 ZCCHC6Q5VYS8 1495 aaKnown RBP30.64■■■□□ 2.5
ECHDC1-214ENST00000474289 CCDC180Q9P1Z9 1646 aa30.35■■■□□ 2.45
ECHDC1-214ENST00000474289 DCAF1Q9Y4B6 1507 aa30.31■■■□□ 2.44
ECHDC1-214ENST00000474289 PELP1Q8IZL8 1130 aaKnown RBP30.21■■■□□ 2.43
ECHDC1-214ENST00000474289 DCAF8L2P0C7V8 631 aa30.02■■■□□ 2.4
ECHDC1-214ENST00000474289 LOC105371045A0A1W2PR82 267 aa29.94■■■□□ 2.38
ECHDC1-214ENST00000474289 TRIM26Q12899 539 aaPredicted RBP29.94■■■□□ 2.38
ECHDC1-214ENST00000474289 SCAF1Q9H7N4 1312 aaKnown RBP29.72■■■□□ 2.35
ECHDC1-214ENST00000474289 ZEB1P37275 1124 aaPredicted RBP29.66■■■□□ 2.34
ECHDC1-214ENST00000474289 ACIN1Q9UKV3 1341 aaKnown RBP29.03■■■□□ 2.24
ECHDC1-214ENST00000474289 ABCC9O60706 1549 aa29.02■■■□□ 2.24
ECHDC1-214ENST00000474289 MYT1Q01538 1121 aa28.99■■■□□ 2.23
ECHDC1-214ENST00000474289 NEUROD1Q13562 356 aa28.95■■■□□ 2.22
ECHDC1-214ENST00000474289 TRIM41Q8WV44 630 aa28.88■■■□□ 2.21
ECHDC1-214ENST00000474289 RSF1Q96T23 1441 aaPredicted RBP28.83■■■□□ 2.21
ECHDC1-214ENST00000474289 FAM9AQ8IZU1 332 aaPredicted RBP28.79■■■□□ 2.2
ECHDC1-214ENST00000474289 GTF3C3Q9Y5Q9 886 aa28.76■■■□□ 2.19
ECHDC1-214ENST00000474289 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
ECHDC1-214ENST00000474289 RB1CC1Q8TDY2 1594 aa28.67■■■□□ 2.18
ECHDC1-214ENST00000474289 CENPBP07199 599 aaPredicted RBP28.65■■■□□ 2.18
ECHDC1-214ENST00000474289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.64■■■□□ 2.18
ECHDC1-214ENST00000474289 EHMT2Q96KQ7 1210 aa28.61■■■□□ 2.17
ECHDC1-214ENST00000474289 DIEXFQ68CQ4 756 aaKnown RBP28.59■■■□□ 2.17
ECHDC1-214ENST00000474289 CCER1Q8TC90 406 aaPredicted RBP28.58■■■□□ 2.17
ECHDC1-214ENST00000474289 CECR2Q9BXF3 1484 aa28.26■■■□□ 2.11
ECHDC1-214ENST00000474289 MROH2BQ7Z745 1585 aa28.18■■■□□ 2.1
ECHDC1-214ENST00000474289 WIZO95785 1651 aa28.08■■■□□ 2.09
ECHDC1-214ENST00000474289 ZNF316A6NFI3 1004 aaPredicted RBP28.07■■■□□ 2.08
ECHDC1-214ENST00000474289 YTHDC1Q96MU7 727 aaKnown RBP28.04■■■□□ 2.08
ECHDC1-214ENST00000474289 WRNQ14191 1432 aaPredicted RBP eCLIP27.98■■■□□ 2.07
ECHDC1-214ENST00000474289 NACADO15069 1562 aa27.97■■■□□ 2.07
ECHDC1-214ENST00000474289 TTBK1Q5TCY1 1321 aaPredicted RBP27.95■■■□□ 2.07
ECHDC1-214ENST00000474289 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
ECHDC1-214ENST00000474289 MIER1Q8N108 512 aa27.86■■■□□ 2.05
ECHDC1-214ENST00000474289 BAZ1AQ9NRL2 1556 aaPredicted RBP27.85■■■□□ 2.05
ECHDC1-214ENST00000474289 CEP162Q5TB80 1403 aa27.79■■■□□ 2.04
ECHDC1-214ENST00000474289 ABCC8Q09428 1581 aa27.68■■■□□ 2.02
ECHDC1-214ENST00000474289 CCDC88BA6NC98 1476 aa27.65■■■□□ 2.02
ECHDC1-214ENST00000474289 TNIKQ9UKE5 1360 aa27.61■■■□□ 2.01
ECHDC1-214ENST00000474289 TOP2AP11388 1531 aaKnown RBP27.54■■■□□ 2
ECHDC1-214ENST00000474289 SOGA1O94964 1423 aa27.52■■■□□ 2
ECHDC1-214ENST00000474289 SMARCA2P51531 1590 aa27.45■■□□□ 1.98
ECHDC1-214ENST00000474289 CLSPNQ9HAW4 1339 aa27.44■■□□□ 1.98
ECHDC1-214ENST00000474289 SUPT16HQ9Y5B9 1047 aaKnown RBP27.44■■□□□ 1.98
ECHDC1-214ENST00000474289 HNRNPUL2Q1KMD3 747 aaKnown RBP27.42■■□□□ 1.98
ECHDC1-214ENST00000474289 SMARCA4P51532 1647 aa27.41■■□□□ 1.98
ECHDC1-214ENST00000474289 RUSC2Q8N2Y8 1516 aa27.38■■□□□ 1.97
ECHDC1-214ENST00000474289 UBTFP17480 764 aaKnown RBP27.38■■□□□ 1.97
ECHDC1-214ENST00000474289 CSRNP3Q8WYN3 585 aa27.34■■□□□ 1.97
ECHDC1-214ENST00000474289 EEA1Q15075 1411 aa27.34■■□□□ 1.97
ECHDC1-214ENST00000474289 ANP32EQ9BTT0 268 aa27.29■■□□□ 1.96
ECHDC1-214ENST00000474289 TSHZ2Q9NRE2 1034 aa27.29■■□□□ 1.96
ECHDC1-214ENST00000474289 GOLGA3Q08378 1498 aa27.28■■□□□ 1.96
ECHDC1-214ENST00000474289 UNC13AQ9UPW8 1703 aa27.16■■□□□ 1.94
ECHDC1-214ENST00000474289 BCL11AQ9H165 835 aa27.14■■□□□ 1.93
ECHDC1-214ENST00000474289 CLIP1P30622 1438 aa27.04■■□□□ 1.92
ECHDC1-214ENST00000474289 VPS8Q8N3P4 1428 aa27.04■■□□□ 1.92
ECHDC1-214ENST00000474289 CEP164Q9UPV0 1460 aa27.01■■□□□ 1.91
ECHDC1-214ENST00000474289 DHX57Q6P158 1386 aaKnown RBP26.99■■□□□ 1.91
ECHDC1-214ENST00000474289 KIF21BO75037 1637 aa26.98■■□□□ 1.91
ECHDC1-214ENST00000474289 SYNJ1O43426 1573 aa26.95■■□□□ 1.9
ECHDC1-214ENST00000474289 APLP2Q06481 763 aa26.94■■□□□ 1.9
ECHDC1-214ENST00000474289 PABPN1Q86U42 306 aaKnown RBP eCLIP26.88■■□□□ 1.89
ECHDC1-214ENST00000474289 RANGAP1P46060 587 aaPredicted RBP26.81■■□□□ 1.88
ECHDC1-214ENST00000474289 BAZ1BQ9UIG0 1483 aaKnown RBP26.81■■□□□ 1.88
ECHDC1-214ENST00000474289 BCANQ96GW7 911 aa26.79■■□□□ 1.88
ECHDC1-214ENST00000474289 RAPGEF2Q9Y4G8 1499 aa26.79■■□□□ 1.88
ECHDC1-214ENST00000474289 KCNH8Q96L42 1107 aa26.79■■□□□ 1.88
ECHDC1-214ENST00000474289 PEG3Q9GZU2 1588 aa26.77■■□□□ 1.88
ECHDC1-214ENST00000474289 BICRAQ9NZM4 1560 aa26.77■■□□□ 1.88
ECHDC1-214ENST00000474289 FKBP8Q14318 412 aa26.7■■□□□ 1.86
ECHDC1-214ENST00000474289 RBM19Q9Y4C8 960 aaKnown RBP26.65■■□□□ 1.86
ECHDC1-214ENST00000474289 ATAD2BQ9ULI0 1458 aa26.59■■□□□ 1.85
ECHDC1-214ENST00000474289 CUX2O14529 1486 aa26.57■■□□□ 1.84
ECHDC1-214ENST00000474289 RRBP1Q9P2E9 1410 aaKnown RBP26.56■■□□□ 1.84
ECHDC1-214ENST00000474289 KANK4Q5T7N3 995 aaPredicted RBP26.55■■□□□ 1.84
ECHDC1-214ENST00000474289 ARAP1Q96P48 1450 aa26.5■■□□□ 1.83
ECHDC1-214ENST00000474289 TOP2BQ02880 1626 aa26.49■■□□□ 1.83
ECHDC1-214ENST00000474289 NEFLP07196 543 aa26.48■■□□□ 1.83
ECHDC1-214ENST00000474289 ITGAEP38570 1179 aa26.41■■□□□ 1.82
ECHDC1-214ENST00000474289 DDX10Q13206 875 aaKnown RBP26.41■■□□□ 1.82
ECHDC1-214ENST00000474289 MAPKBP1O60336 1514 aa26.41■■□□□ 1.82
ECHDC1-214ENST00000474289 MSH5O43196 834 aa26.41■■□□□ 1.82
ECHDC1-214ENST00000474289 CCNB3Q8WWL7 1395 aa26.4■■□□□ 1.82
ECHDC1-214ENST00000474289 PRXQ9BXM0 1461 aa26.39■■□□□ 1.81
ECHDC1-214ENST00000474289 ERICH3Q5RHP9 1530 aa26.37■■□□□ 1.81
ECHDC1-214ENST00000474289 BIVM-ERCC5R4GMW8 1640 aa26.36■■□□□ 1.81
ECHDC1-214ENST00000474289 RAB3GAP2Q9H2M9 1393 aa26.33■■□□□ 1.81
ECHDC1-214ENST00000474289 TRIM52Q96A61 297 aa26.33■■□□□ 1.8
ECHDC1-214ENST00000474289 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
ECHDC1-214ENST00000474289 PPP1R15AO75807 674 aaPredicted RBP26.31■■□□□ 1.8
ECHDC1-214ENST00000474289 CCER2I3L3R5 266 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms