Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AL354751.1-201ENST00000412768 1863 ntBASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 KRT17P1-201ENST00000399211 1546 ntBASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 ZNRF2P3-201ENST00000424200 374 ntBASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CCDC28BQ9BUN5 SDHAP1-207ENST00000440850 2000 ntBASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 AC018470.1-201ENST00000624790 3129 ntBASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 GPX1P1-201ENST00000388829 606 ntBASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 AIRN-201ENST00000601203 4374 ntBASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC28BQ9BUN5 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC28BQ9BUN5 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms