Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.83■□□□□ 0.6
SHMT2P34897 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.83■□□□□ 0.6
SHMT2P34897 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.83■□□□□ 0.6
SHMT2P34897 MIR4785-201ENST00000585005 73 ntBASIC18.83■□□□□ 0.6
SHMT2P34897 CR392000.1-201ENST00000624770 1228 ntBASIC18.83■□□□□ 0.6
SHMT2P34897 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
SHMT2P34897 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SHMT2P34897 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.83■□□□□ 0.6
SHMT2P34897 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.82■□□□□ 0.6
SHMT2P34897 KRT17P2-201ENST00000300992 1314 ntBASIC18.82■□□□□ 0.6
SHMT2P34897 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.82■□□□□ 0.6
SHMT2P34897 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SHMT2P34897 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SHMT2P34897 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.82■□□□□ 0.6
SHMT2P34897 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.82■□□□□ 0.6
SHMT2P34897 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.82■□□□□ 0.6
SHMT2P34897 HLA-A-209ENST00000638375 975 ntBASIC18.82■□□□□ 0.6
SHMT2P34897 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SHMT2P34897 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SHMT2P34897 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.82■□□□□ 0.6
SHMT2P34897 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.82■□□□□ 0.6
SHMT2P34897 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.82■□□□□ 0.6
SHMT2P34897 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHMT2P34897 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.81■□□□□ 0.6
SHMT2P34897 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.81■□□□□ 0.6
SHMT2P34897 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 TSPY7P-201ENST00000431358 1114 ntBASIC18.81■□□□□ 0.6
SHMT2P34897 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 AC026271.3-201ENST00000571884 352 ntBASIC18.81■□□□□ 0.6
SHMT2P34897 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SHMT2P34897 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.81■□□□□ 0.6
SHMT2P34897 AC131212.4-201ENST00000623606 975 ntBASIC18.81■□□□□ 0.6
SHMT2P34897 AL031985.4-201ENST00000642138 673 ntBASIC18.81■□□□□ 0.6
SHMT2P34897 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SHMT2P34897 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.81■□□□□ 0.6
SHMT2P34897 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.81■□□□□ 0.6
SHMT2P34897 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SHMT2P34897 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHMT2P34897 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHMT2P34897 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.8■□□□□ 0.6
SHMT2P34897 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SHMT2P34897 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SHMT2P34897 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.8■□□□□ 0.6
SHMT2P34897 AL355355.2-201ENST00000442321 338 ntBASIC18.8■□□□□ 0.6
SHMT2P34897 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.8■□□□□ 0.6
SHMT2P34897 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.8■□□□□ 0.6
SHMT2P34897 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.8■□□□□ 0.6
SHMT2P34897 AC026471.5-201ENST00000615068 467 ntBASIC18.8■□□□□ 0.6
SHMT2P34897 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms