RNA–Protein interactions for RNA: ENST00000638375.1

HLA-A-209, Transcript of major histocompatibility complex, class I, A, humanhuman

BASIC

Gene HLA-A, Length 975 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-209ENST00000638375 NISCHQ9Y2I1 1504 aa46.35■■■■■ 5.01
HLA-A-209ENST00000638375 CCDC180Q9P1Z9 1646 aa40.94■■■■■ 4.14
HLA-A-209ENST00000638375 ABCC9O60706 1549 aa39.63■■■■□ 3.93
HLA-A-209ENST00000638375 ZCCHC6Q5VYS8 1495 aaKnown RBP38.73■■■■□ 3.79
HLA-A-209ENST00000638375 DCAF8L2P0C7V8 631 aa38.49■■■■□ 3.75
HLA-A-209ENST00000638375 NACADO15069 1562 aa38.38■■■■□ 3.73
HLA-A-209ENST00000638375 DCAF1Q9Y4B6 1507 aa38.35■■■■□ 3.73
HLA-A-209ENST00000638375 MYO15BQ96JP2 1530 aa38.33■■■■□ 3.73
HLA-A-209ENST00000638375 RB1CC1Q8TDY2 1594 aa38.29■■■■□ 3.72
HLA-A-209ENST00000638375 SCRIBQ14160 1630 aa37.44■■■■□ 3.58
HLA-A-209ENST00000638375 UNC13AQ9UPW8 1703 aa37.44■■■■□ 3.58
HLA-A-209ENST00000638375 BICRAQ9NZM4 1560 aa37.17■■■■□ 3.54
HLA-A-209ENST00000638375 PABPN1Q86U42 306 aaKnown RBP eCLIP37.13■■■■□ 3.53
HLA-A-209ENST00000638375 SHROOM4Q9ULL8 1493 aa36.95■■■■□ 3.51
HLA-A-209ENST00000638375 EIF4G1Q04637 1599 aaKnown RBP36.13■■■■□ 3.37
HLA-A-209ENST00000638375 CECR2Q9BXF3 1484 aa36.1■■■■□ 3.37
HLA-A-209ENST00000638375 DNAJC5BQ9UF47 199 aa35.95■■■■□ 3.35
HLA-A-209ENST00000638375 BAZ1AQ9NRL2 1556 aaPredicted RBP35.87■■■■□ 3.33
HLA-A-209ENST00000638375 SMARCA4P51532 1647 aa35.86■■■■□ 3.33
HLA-A-209ENST00000638375 CC2D2AQ9P2K1 1620 aa35.85■■■■□ 3.33
HLA-A-209ENST00000638375 MROH2BQ7Z745 1585 aa35.76■■■■□ 3.31
HLA-A-209ENST00000638375 ATAD2BQ9ULI0 1458 aa35.54■■■■□ 3.28
HLA-A-209ENST00000638375 RSF1Q96T23 1441 aaPredicted RBP35.53■■■■□ 3.28
HLA-A-209ENST00000638375 PEG3Q9GZU2 1588 aa35.49■■■■□ 3.27
HLA-A-209ENST00000638375 SMARCA2P51531 1590 aa35.48■■■■□ 3.27
HLA-A-209ENST00000638375 NCAPD3P42695 1498 aa35.43■■■■□ 3.26
HLA-A-209ENST00000638375 WIZO95785 1651 aa35.38■■■■□ 3.25
HLA-A-209ENST00000638375 HMGXB3Q12766 1538 aa35.3■■■■□ 3.24
HLA-A-209ENST00000638375 BAZ1BQ9UIG0 1483 aaKnown RBP35.26■■■■□ 3.23
HLA-A-209ENST00000638375 TOP2AP11388 1531 aaKnown RBP35.03■■■■□ 3.2
HLA-A-209ENST00000638375 SUPT5HO00267 1087 aaKnown RBP34.99■■■■□ 3.19
HLA-A-209ENST00000638375 CCDC88BA6NC98 1476 aa34.63■■■■□ 3.13
HLA-A-209ENST00000638375 NESP48681 1621 aa34.46■■■■□ 3.11
HLA-A-209ENST00000638375 CADPSQ9ULU8 1353 aa34.43■■■■□ 3.1
HLA-A-209ENST00000638375 LAMC3Q9Y6N6 1575 aa34.39■■■■□ 3.1
HLA-A-209ENST00000638375 CFTRP13569 1480 aa34.33■■■■□ 3.09
HLA-A-209ENST00000638375 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
HLA-A-209ENST00000638375 ERCC6Q03468 1493 aa34.07■■■■□ 3.05
HLA-A-209ENST00000638375 PRDM2Q13029 1718 aa34.06■■■■□ 3.04
HLA-A-209ENST00000638375 FANCD2Q9BXW9 1451 aa34.03■■■■□ 3.04
HLA-A-209ENST00000638375 KIF21AQ7Z4S6 1674 aa34.03■■■■□ 3.04
HLA-A-209ENST00000638375 CEP164Q9UPV0 1460 aa33.93■■■■□ 3.02
HLA-A-209ENST00000638375 THOC2Q8NI27 1593 aaKnown RBP33.81■■■■□ 3
HLA-A-209ENST00000638375 MRC2Q9UBG0 1479 aa33.79■■■■□ 3
HLA-A-209ENST00000638375 URB2Q14146 1524 aaKnown RBP33.69■■■□□ 2.98
HLA-A-209ENST00000638375 WDR62O43379 1518 aa33.67■■■□□ 2.98
HLA-A-209ENST00000638375 TOPBP1Q92547 1522 aa33.56■■■□□ 2.96
HLA-A-209ENST00000638375 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
HLA-A-209ENST00000638375 ABCC8Q09428 1581 aa33.53■■■□□ 2.96
HLA-A-209ENST00000638375 CUX2O14529 1486 aa33.53■■■□□ 2.96
HLA-A-209ENST00000638375 CUX1P39880 1505 aa33.51■■■□□ 2.95
HLA-A-209ENST00000638375 WRNQ14191 1432 aaPredicted RBP eCLIP33.46■■■□□ 2.95
HLA-A-209ENST00000638375 SYNJ1O43426 1573 aa33.38■■■□□ 2.93
HLA-A-209ENST00000638375 TOP2BQ02880 1626 aa33.32■■■□□ 2.92
HLA-A-209ENST00000638375 BIVM-ERCC5R4GMW8 1640 aa33.31■■■□□ 2.92
HLA-A-209ENST00000638375 POLA1P09884 1462 aaPredicted RBP33.31■■■□□ 2.92
HLA-A-209ENST00000638375 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
HLA-A-209ENST00000638375 IFT140Q96RY7 1462 aa33.2■■■□□ 2.91
HLA-A-209ENST00000638375 RAD54L2Q9Y4B4 1467 aa33.18■■■□□ 2.9
HLA-A-209ENST00000638375 SOGA1O94964 1423 aa33.17■■■□□ 2.9
HLA-A-209ENST00000638375 TARBP1Q13395 1621 aaKnown RBP33.14■■■□□ 2.9
HLA-A-209ENST00000638375 ZNF608Q9ULD9 1512 aaPredicted RBP33.05■■■□□ 2.88
HLA-A-209ENST00000638375 TRIM41Q8WV44 630 aa33■■■□□ 2.87
HLA-A-209ENST00000638375 ABCA10Q8WWZ4 1543 aa33■■■□□ 2.87
HLA-A-209ENST00000638375 WDR97A6NE52 1622 aa32.99■■■□□ 2.87
HLA-A-209ENST00000638375 CHIC1Q5VXU3 224 aa32.98■■■□□ 2.87
HLA-A-209ENST00000638375 TDRD9Q8NDG6 1382 aaKnown RBP32.94■■■□□ 2.86
HLA-A-209ENST00000638375 AQRO60306 1485 aaKnown RBP eCLIP32.92■■■□□ 2.86
HLA-A-209ENST00000638375 EIF4G3O43432 1585 aaKnown RBP32.92■■■□□ 2.86
HLA-A-209ENST00000638375 ABCA5Q8WWZ7 1642 aa32.83■■■□□ 2.85
HLA-A-209ENST00000638375 GAPVD1Q14C86 1478 aa32.79■■■□□ 2.84
HLA-A-209ENST00000638375 GRIN2BQ13224 1484 aa32.71■■■□□ 2.83
HLA-A-209ENST00000638375 KIF27Q86VH2 1401 aa32.7■■■□□ 2.83
HLA-A-209ENST00000638375 PBRM1Q86U86 1689 aa32.67■■■□□ 2.82
HLA-A-209ENST00000638375 RUSC2Q8N2Y8 1516 aa32.63■■■□□ 2.81
HLA-A-209ENST00000638375 SNAPC4Q5SXM2 1469 aa32.62■■■□□ 2.81
HLA-A-209ENST00000638375 ERICH3Q5RHP9 1530 aa32.6■■■□□ 2.81
HLA-A-209ENST00000638375 MAGI1Q96QZ7 1491 aaPredicted RBP32.57■■■□□ 2.8
HLA-A-209ENST00000638375 IGF1RP08069 1367 aa32.54■■■□□ 2.8
HLA-A-209ENST00000638375 ADAMTS12P58397 1594 aa32.48■■■□□ 2.79
HLA-A-209ENST00000638375 SYNJ2O15056 1496 aa32.44■■■□□ 2.78
HLA-A-209ENST00000638375 FHAD1B1AJZ9 1412 aa32.43■■■□□ 2.78
HLA-A-209ENST00000638375 EEA1Q15075 1411 aa32.41■■■□□ 2.78
HLA-A-209ENST00000638375 CHD1O14646 1710 aa32.38■■■□□ 2.77
HLA-A-209ENST00000638375 CUL7Q14999 1698 aa32.38■■■□□ 2.77
HLA-A-209ENST00000638375 FBLN2P98095 1184 aa32.38■■■□□ 2.77
HLA-A-209ENST00000638375 CHMP7Q8WUX9 453 aaPredicted RBP32.37■■■□□ 2.77
HLA-A-209ENST00000638375 CARMIL1Q5VZK9 1371 aa32.34■■■□□ 2.77
HLA-A-209ENST00000638375 FAM9AQ8IZU1 332 aaPredicted RBP32.34■■■□□ 2.77
HLA-A-209ENST00000638375 CSRNP3Q8WYN3 585 aa32.31■■■□□ 2.76
HLA-A-209ENST00000638375 GRIN2AQ12879 1464 aa32.3■■■□□ 2.76
HLA-A-209ENST00000638375 PRXQ9BXM0 1461 aa32.24■■■□□ 2.75
HLA-A-209ENST00000638375 OSCARQ8IYS5 282 aa32.23■■■□□ 2.75
HLA-A-209ENST00000638375 RAPGEF2Q9Y4G8 1499 aa32.2■■■□□ 2.75
HLA-A-209ENST00000638375 NUP160Q12769 1436 aa32.16■■■□□ 2.74
HLA-A-209ENST00000638375 CEP170Q5SW79 1584 aa32.14■■■□□ 2.74
HLA-A-209ENST00000638375 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
HLA-A-209ENST00000638375 KIF21BO75037 1637 aa32.05■■■□□ 2.72
HLA-A-209ENST00000638375 KIAA0586Q9BVV6 1533 aa31.95■■■□□ 2.7
HLA-A-209ENST00000638375 DNAJC5Q9H3Z4 198 aa31.92■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms