Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 RNF152P1-201ENST00000397754 604 ntBASIC23.65■■□□□ 1.38
USP48Q86UV5 KRT18P48-201ENST00000434763 852 ntBASIC23.65■■□□□ 1.38
USP48Q86UV5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 C1QL1P1-201ENST00000568105 661 ntBASIC23.65■■□□□ 1.38
USP48Q86UV5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
USP48Q86UV5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 TCF3P1-201ENST00000423021 1937 ntBASIC23.65■■□□□ 1.38
USP48Q86UV5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.64■■□□□ 1.38
USP48Q86UV5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.64■■□□□ 1.38
USP48Q86UV5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USP48Q86UV5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USP48Q86UV5 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.38
USP48Q86UV5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.64■■□□□ 1.38
USP48Q86UV5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP48Q86UV5 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC23.64■■□□□ 1.37
USP48Q86UV5 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 AC009947.2-201ENST00000444014 672 ntBASIC23.64■■□□□ 1.37
USP48Q86UV5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC23.64■■□□□ 1.37
USP48Q86UV5 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC23.64■■□□□ 1.37
USP48Q86UV5 AP000550.4-202ENST00000639755 178 ntBASIC23.64■■□□□ 1.37
USP48Q86UV5 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP48Q86UV5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
USP48Q86UV5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
USP48Q86UV5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
USP48Q86UV5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
USP48Q86UV5 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC23.63■■□□□ 1.37
USP48Q86UV5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC23.63■■□□□ 1.37
USP48Q86UV5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC23.63■■□□□ 1.37
USP48Q86UV5 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
USP48Q86UV5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.63■■□□□ 1.37
USP48Q86UV5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.63■■□□□ 1.37
USP48Q86UV5 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 AC092720.2-201ENST00000602388 1665 ntBASIC23.63■■□□□ 1.37
USP48Q86UV5 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP48Q86UV5 PTBP1P-201ENST00000554374 1601 ntBASIC23.62■■□□□ 1.37
USP48Q86UV5 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP48Q86UV5 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.62■■□□□ 1.37
USP48Q86UV5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC23.62■■□□□ 1.37
USP48Q86UV5 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.62■■□□□ 1.37
USP48Q86UV5 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC23.62■■□□□ 1.37
USP48Q86UV5 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC23.62■■□□□ 1.37
USP48Q86UV5 SLC25A1P4-201ENST00000567977 778 ntBASIC23.62■■□□□ 1.37
USP48Q86UV5 AL138966.2-201ENST00000621997 464 ntBASIC23.62■■□□□ 1.37
USP48Q86UV5 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.62■■□□□ 1.37
USP48Q86UV5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP48Q86UV5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.61■■□□□ 1.37
USP48Q86UV5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.61■■□□□ 1.37
USP48Q86UV5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC23.61■■□□□ 1.37
USP48Q86UV5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.61■■□□□ 1.37
USP48Q86UV5 COPS8-203ENST00000409334 794 ntTSL 5 BASIC23.61■■□□□ 1.37
USP48Q86UV5 HMGA1P5-201ENST00000412453 271 ntBASIC23.61■■□□□ 1.37
USP48Q86UV5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.61■■□□□ 1.37
USP48Q86UV5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC23.61■■□□□ 1.37
USP48Q86UV5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC23.61■■□□□ 1.37
USP48Q86UV5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
USP48Q86UV5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP48Q86UV5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP48Q86UV5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.6■■□□□ 1.37
USP48Q86UV5 AC087289.5-201ENST00000586076 3175 ntBASIC23.6■■□□□ 1.37
USP48Q86UV5 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP48Q86UV5 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms