Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.78■□□□□ 0.92
SSX2IPQ9Y2D8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 CCR12P-201ENST00000446203 998 ntBASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AC104076.2-201ENST00000448912 469 ntBASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 AC116562.4-202ENST00000641738 218 ntBASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 TMEM179-206ENST00000616017 1645 ntBASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX2IPQ9Y2D8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SSX2IPQ9Y2D8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
SSX2IPQ9Y2D8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.77■□□□□ 0.91
SSX2IPQ9Y2D8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 BX664615.1-201ENST00000443558 458 ntBASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 LINC01238-205ENST00000567549 1107 ntBASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 KRT8P8-201ENST00000434750 1448 ntBASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX2IPQ9Y2D8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 AC096733.2-201ENST00000609937 1394 ntBASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 HMGA1P5-201ENST00000412453 271 ntBASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 SLC25A1P2-201ENST00000430693 912 ntBASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX2IPQ9Y2D8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.74■□□□□ 0.91
SSX2IPQ9Y2D8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms