Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.134e-6■□□□□ 11.2
LSM11P83369 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.134e-6■□□□□ 11.2
LSM11P83369 ARAP1-214ENST00000541623 533 ntTSL 514.04□□□□□ -0.164e-6■□□□□ 11.2
LSM11P83369 TPM2-206ENST00000486018 699 ntTSL 214.03□□□□□ -0.164e-6■□□□□ 11.2
LSM11P83369 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.194e-6■□□□□ 11.2
LSM11P83369 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.294e-6■□□□□ 11.2
LSM11P83369 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.334e-6■□□□□ 11.2
LSM11P83369 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.99□□□□□ -0.334e-6■□□□□ 11.2
LSM11P83369 IFT172-217ENST00000509128 1723 ntTSL 1 (best)12.78□□□□□ -0.361e-7■□□□□ 11.2
LSM11P83369 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.62□□□□□ -0.394e-6■□□□□ 11.2
LSM11P83369 STK36-215ENST00000486644 730 ntTSL 512.61□□□□□ -0.394e-6■□□□□ 11.2
LSM11P83369 ARAP1-217ENST00000542612 428 ntTSL 512.5□□□□□ -0.414e-6■□□□□ 11.2
LSM11P83369 DHPS-218ENST00000600510 1085 ntTSL 212.26□□□□□ -0.454e-6■□□□□ 11.2
LSM11P83369 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.454e-6■□□□□ 11.2
LSM11P83369 ARAP1-219ENST00000544721 773 ntTSL 212.12□□□□□ -0.474e-6■□□□□ 11.2
LSM11P83369 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC11.95□□□□□ -0.54e-6■□□□□ 11.2
LSM11P83369 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC11.81□□□□□ -0.524e-6■□□□□ 11.2
LSM11P83369 BDH1-214ENST00000479425 1144 ntTSL 211.46□□□□□ -0.574e-6■□□□□ 11.2
LSM11P83369 SHC1-211ENST00000490667 727 ntTSL 211.43□□□□□ -0.584e-6■□□□□ 11.2
LSM11P83369 DHPS-214ENST00000598246 553 ntTSL 311.2□□□□□ -0.624e-6■□□□□ 11.2
LSM11P83369 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC10.73□□□□□ -0.694e-6■□□□□ 11.2
LSM11P83369 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.74e-6■□□□□ 11.2
LSM11P83369 DHPS-202ENST00000351660 1090 ntTSL 1 (best) BASIC10.35□□□□□ -0.754e-6■□□□□ 11.2
LSM11P83369 IFT172-216ENST00000507184 5565 ntTSL 510□□□□□ -0.811e-7■□□□□ 11.2
LSM11P83369 COL4A5-201ENST00000328300 6483 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.834e-6■□□□□ 11.2
LSM11P83369 COL4A5-202ENST00000361603 6469 ntAPPRIS P3 TSL 2 BASIC9.89□□□□□ -0.834e-6■□□□□ 11.2
LSM11P83369 DHPS-221ENST00000601537 1176 ntTSL 1 (best)9.64□□□□□ -0.874e-6■□□□□ 11.2
LSM11P83369 IFT172-201ENST00000260570 5415 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.891e-7■□□□□ 11.2
LSM11P83369 DHPS-220ENST00000600864 464 ntTSL 59.09□□□□□ -0.954e-6■□□□□ 11.2
LSM11P83369 BDH1-213ENST00000477015 595 ntTSL 29.04□□□□□ -0.964e-6■□□□□ 11.2
LSM11P83369 HAUS5-204ENST00000430749 526 ntTSL 28.59□□□□□ -1.034e-6■□□□□ 11.2
LSM11P83369 DHPS-222ENST00000601639 1133 ntTSL 58.58□□□□□ -1.044e-6■□□□□ 11.2
LSM11P83369 BDH1-210ENST00000455876 386 ntTSL 38.24□□□□□ -1.094e-6■□□□□ 11.2
LSM11P83369 BDH1-215ENST00000483920 659 ntTSL 38.16□□□□□ -1.14e-6■□□□□ 11.2
LSM11P83369 KIAA0368-203ENST00000374383 573 ntAPPRIS ALT2 TSL 27.93□□□□□ -1.144e-6■□□□□ 11.2
LSM11P83369 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC7.21□□□□□ -1.264e-6■□□□□ 11.2
LSM11P83369 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.66□□□□□ -1.664e-6■□□□□ 11.2
LSM11P83369 CDK5RAP3-211ENST00000578996 566 ntTSL 28.01□□□□□ -1.133e-10■□□□□ 11.2
LSM11P83369 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.431e-8■□□□□ 11.2
LSM11P83369 OGT-210ENST00000488174 7243 ntTSL 55.53□□□□□ -1.521e-8■□□□□ 11.2
LSM11P83369 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.259e-7■□□□□ 11.2
LSM11P83369 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.431e-12■□□□□ 11.2
LSM11P83369 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.74■□□□□ 0.755e-11■□□□□ 11.2
LSM11P83369 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.165e-11■□□□□ 11.2
LSM11P83369 PABPN1-205ENST00000555295 406 ntTSL 311.17□□□□□ -0.625e-11■□□□□ 11.2
LSM11P83369 NEU4-211ENST00000435855 2281 ntTSL 220.28■□□□□ 0.844e-8■□□□□ 11.2
LSM11P83369 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.714e-8■□□□□ 11.2
LSM11P83369 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.624e-8■□□□□ 11.2
LSM11P83369 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.554e-8■□□□□ 11.2
LSM11P83369 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.35■□□□□ 0.534e-8■□□□□ 11.2
LSM11P83369 NEU4-217ENST00000618597 3013 ntTSL 218.1■□□□□ 0.494e-8■□□□□ 11.2
LSM11P83369 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.79■□□□□ 0.444e-8■□□□□ 11.2
LSM11P83369 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.472e-6■□□□□ 11.2
LSM11P83369 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.232e-6■□□□□ 11.2
LSM11P83369 SFXN5-207ENST00000461352 3578 ntTSL 1 (best)11.17□□□□□ -0.625e-7■□□□□ 11.2
LSM11P83369 SFXN5-211ENST00000474528 4072 ntTSL 1 (best)10.92□□□□□ -0.665e-7■□□□□ 11.2
LSM11P83369 SFXN5-201ENST00000272433 4140 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.775e-7■□□□□ 11.2
LSM11P83369 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC10.83□□□□□ -0.685e-81■□□□□ 11.2
LSM11P83369 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.896e-7■□□□□ 11.2
LSM11P83369 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)15.52■□□□□ 0.076e-7■□□□□ 11.2
LSM11P83369 NELFCD-204ENST00000474543 2047 ntTSL 513.6□□□□□ -0.236e-7■□□□□ 11.2
LSM11P83369 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)13.14□□□□□ -0.316e-7■□□□□ 11.2
LSM11P83369 NELFCD-207ENST00000479207 1112 ntTSL 310.14□□□□□ -0.796e-7■□□□□ 11.2
LSM11P83369 NELFCD-206ENST00000478389 3581 ntTSL 27.67□□□□□ -1.186e-7■□□□□ 11.2
LSM11P83369 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.292e-9■□□□□ 11.2
LSM11P83369 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.324e-7■□□□□ 11.2
LSM11P83369 MAN2C1-219ENST00000564570 803 ntTSL 518.69■□□□□ 0.589e-8■□□□□ 11.2
LSM11P83369 PABPC1L-209ENST00000465761 801 ntTSL 29.81□□□□□ -0.842e-7■□□□□ 11.1
LSM11P83369 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.372e-28■□□□□ 11.1
LSM11P83369 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.252e-28■□□□□ 11.1
LSM11P83369 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.83■■□□□ 1.252e-28■□□□□ 11.1
LSM11P83369 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.112e-28■□□□□ 11.1
LSM11P83369 VEGFA-220ENST00000519767 970 ntTSL 1 (best)21.96■■□□□ 1.112e-28■□□□□ 11.1
LSM11P83369 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.082e-28■□□□□ 11.1
LSM11P83369 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.74■■□□□ 1.072e-28■□□□□ 11.1
LSM11P83369 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC11.17□□□□□ -0.623e-8■□□□□ 11.1
LSM11P83369 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.793e-8■□□□□ 11.1
LSM11P83369 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.793e-8■□□□□ 11.1
LSM11P83369 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.913e-8■□□□□ 11.1
LSM11P83369 FLNB-210ENST00000481470 6497 ntTSL 1 (best)9.12□□□□□ -0.953e-8■□□□□ 11.1
LSM11P83369 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.045e-6■□□□□ 11.1
LSM11P83369 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.896e-10■□□□□ 11.1
LSM11P83369 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.875e-6■□□□□ 11.1
LSM11P83369 LTB4R-205ENST00000556141 797 ntTSL 319.01■□□□□ 0.635e-6■□□□□ 11.1
LSM11P83369 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.26e-10■□□□□ 11.1
LSM11P83369 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.086e-10■□□□□ 11.1
LSM11P83369 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.066e-10■□□□□ 11.1
LSM11P83369 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.35e-6■□□□□ 11.1
LSM11P83369 TSNARE1-203ENST00000518928 940 ntTSL 312.4□□□□□ -0.426e-10■□□□□ 11.1
LSM11P83369 LTB4R-204ENST00000553481 431 ntTSL 212.22□□□□□ -0.455e-6■□□□□ 11.1
LSM11P83369 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.131e-8■□□□□ 11.1
LSM11P83369 SLC13A5-201ENST00000293800 3176 ntTSL 2 BASIC10.44□□□□□ -0.741e-8■□□□□ 11.1
LSM11P83369 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.089e-7■□□□□ 11.1
Retrieved 100 of 11,495 protein–RNA pairs in 63.4 ms