Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 TBC1D13-201ENST00000223865 3378 ntTSL 2 BASIC7.85□□□□□ -1.158e-6■■■□□ 15.3
SUB1P53999 HNRNPH2-201ENST00000316594 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.178e-6■■■□□ 15.3
SUB1P53999 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.62□□□□□ -1.198e-6■■■□□ 15.3
SUB1P53999 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.218e-6■■■□□ 15.3
SUB1P53999 LONP2-206ENST00000565867 1969 ntTSL 37.45□□□□□ -1.228e-6■■■□□ 15.3
SUB1P53999 METTL17-203ENST00000553389 952 ntTSL 27.44□□□□□ -1.228e-6■■■□□ 15.3
SUB1P53999 METTL17-211ENST00000554849 915 ntTSL 57.44□□□□□ -1.228e-6■■■□□ 15.3
SUB1P53999 GRB10-209ENST00000406641 2700 ntTSL 5 BASIC7.22□□□□□ -1.258e-6■■■□□ 15.3
SUB1P53999 SMARCE1-207ENST00000469334 2128 ntTSL 57.21□□□□□ -1.258e-6■■■□□ 15.3
SUB1P53999 GRB10-213ENST00000461886 624 ntTSL 26.66□□□□□ -1.348e-6■■■□□ 15.3
SUB1P53999 MRPL9-206ENST00000468006 531 ntTSL 36.54□□□□□ -1.368e-6■■■□□ 15.3
SUB1P53999 USP48-206ENST00000464577 2089 ntTSL 25.89□□□□□ -1.478e-6■■■□□ 15.3
SUB1P53999 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.28□□□□□ -1.568e-6■■■□□ 15.3
SUB1P53999 AC012254.2-202ENST00000602926 291 ntAPPRIS ALT2 TSL 25.21□□□□□ -1.588e-6■■■□□ 15.3
SUB1P53999 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC5.08□□□□□ -1.68e-6■■■□□ 15.3
SUB1P53999 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.618e-6■■■□□ 15.3
SUB1P53999 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.64□□□□□ -1.678e-6■■■□□ 15.3
SUB1P53999 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.698e-6■■■□□ 15.3
SUB1P53999 METTL17-208ENST00000554354 249 ntTSL 54.49□□□□□ -1.698e-6■■■□□ 15.3
SUB1P53999 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.4□□□□□ -1.718e-6■■■□□ 15.3
SUB1P53999 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.748e-6■■■□□ 15.3
SUB1P53999 LONP2-204ENST00000564259 819 ntTSL 34.03□□□□□ -1.768e-6■■■□□ 15.3
SUB1P53999 MRPL9-211ENST00000495867 403 ntTSL 23.93□□□□□ -1.788e-6■■■□□ 15.3
SUB1P53999 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.48□□□□□ -1.858e-6■■■□□ 15.3
SUB1P53999 CLNS1A-208ENST00000527265 620 ntTSL 23.06□□□□□ -1.928e-6■■■□□ 15.3
SUB1P53999 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.05□□□□□ -1.928e-6■■■□□ 15.3
SUB1P53999 TXNDC9-204ENST00000422767 768 ntTSL 51.64□□□□□ -2.158e-6■■■□□ 15.3
SUB1P53999 CLNS1A-203ENST00000525359 283 ntTSL 21.36□□□□□ -2.198e-6■■■□□ 15.3
SUB1P53999 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.631e-11■■■□□ 15.3
SUB1P53999 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC9.95□□□□□ -0.821e-11■■■□□ 15.3
SUB1P53999 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC6.81□□□□□ -1.321e-11■■■□□ 15.3
SUB1P53999 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC6.02□□□□□ -1.451e-11■■■□□ 15.3
SUB1P53999 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC10.02□□□□□ -0.814e-29■■■□□ 15.3
SUB1P53999 LRRC75A-AS1-228ENST00000584141 564 ntTSL 213.68□□□□□ -0.224e-29■■■□□ 15.3
SUB1P53999 LRRC75A-AS1-219ENST00000578757 920 ntTSL 1 (best)9.46□□□□□ -0.94e-29■■■□□ 15.3
SUB1P53999 LRRC75A-AS1-216ENST00000492250 565 ntTSL 53.37□□□□□ -1.874e-29■■■□□ 15.3
SUB1P53999 VIM-202ENST00000421459 753 ntTSL 25.78□□□□□ -1.485e-11■■■□□ 15.3
SUB1P53999 VIM-207ENST00000495528 962 ntTSL 24.76□□□□□ -1.655e-11■■■□□ 15.3
SUB1P53999 VIM-210ENST00000637053 508 ntTSL 22.48□□□□□ -2.015e-11■■■□□ 15.3
SUB1P53999 SRSF1-206ENST00000583741 1465 ntTSL 515.51■□□□□ 0.073e-12■■■□□ 15.2
SUB1P53999 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.23e-12■■■□□ 15.2
SUB1P53999 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.39□□□□□ -0.273e-12■■■□□ 15.2
SUB1P53999 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.35□□□□□ -0.273e-12■■■□□ 15.2
SUB1P53999 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC11.02□□□□□ -0.653e-12■■■□□ 15.2
SUB1P53999 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)9.98□□□□□ -0.813e-12■■■□□ 15.2
SUB1P53999 SRSF1-207ENST00000584668 758 ntTSL 36.05□□□□□ -1.443e-12■■■□□ 15.2
SUB1P53999 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.113e-12■■■□□ 15.2
SUB1P53999 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC9.15□□□□□ -0.948e-10■■■□□ 15.2
SUB1P53999 RPL4-202ENST00000561554 580 ntTSL 47.63□□□□□ -1.192e-22■■■□□ 15.2
SUB1P53999 MDH2-202ENST00000424167 681 ntTSL 29□□□□□ -0.971e-24■■■□□ 15.2
SUB1P53999 SERP1-205ENST00000487153 657 ntTSL 4 BASIC15.48■□□□□ 0.075e-17■■■□□ 15.2
SUB1P53999 TTC1-201ENST00000231238 1467 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.163e-6■■■□□ 15.2
SUB1P53999 TTC1-205ENST00000522793 1432 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.193e-6■■■□□ 15.2
SUB1P53999 TCP1-211ENST00000539756 780 ntTSL 311.75□□□□□ -0.535e-7■■■□□ 15.2
SUB1P53999 WASF2-202ENST00000618852 5676 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.723e-6■■■□□ 15.2
SUB1P53999 RPLP0-220ENST00000551217 677 nt7.05□□□□□ -1.283e-8■■■□□ 15.2
SUB1P53999 RBBP4-201ENST00000373485 1417 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.272e-16■■■□□ 15.2
SUB1P53999 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.332e-16■■■□□ 15.2
SUB1P53999 RBBP4-207ENST00000460669 783 ntTSL 53.14□□□□□ -1.912e-16■■■□□ 15.2
SUB1P53999 RBBP4-212ENST00000482190 616 ntTSL 32.79□□□□□ -1.962e-16■■■□□ 15.2
SUB1P53999 ETFA-206ENST00000559075 1735 ntTSL 217.07■□□□□ 0.321e-13■■■□□ 15.2
SUB1P53999 ETFA-207ENST00000559386 893 ntTSL 515.61■□□□□ 0.091e-13■■■□□ 15.2
SUB1P53999 ETFA-215ENST00000560595 917 ntTSL 1 (best)15.61■□□□□ 0.091e-13■■■□□ 15.2
SUB1P53999 ETFA-213ENST00000560309 633 ntTSL 315.36■□□□□ 0.051e-13■■■□□ 15.2
SUB1P53999 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.31□□□□□ -0.121e-13■■■□□ 15.2
SUB1P53999 ETFA-211ENST00000560044 1054 ntTSL 513.79□□□□□ -0.21e-13■■■□□ 15.2
SUB1P53999 ETFA-218ENST00000560899 910 ntTSL 513.09□□□□□ -0.311e-13■■■□□ 15.2
SUB1P53999 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.09□□□□□ -0.311e-13■■■□□ 15.2
SUB1P53999 ETFA-214ENST00000560345 717 ntTSL 46.42□□□□□ -1.381e-13■■■□□ 15.2
SUB1P53999 ETFA-210ENST00000559973 804 ntTSL 36.01□□□□□ -1.451e-13■■■□□ 15.2
SUB1P53999 ETFA-217ENST00000560816 412 ntTSL 36□□□□□ -1.451e-13■■■□□ 15.2
SUB1P53999 ETFA-209ENST00000559758 893 ntTSL 24.74□□□□□ -1.651e-13■■■□□ 15.2
SUB1P53999 EIF4A1-207ENST00000578324 1577 ntTSL 513□□□□□ -0.332e-6■■■□□ 15.2
SUB1P53999 NCAPD2-212ENST00000542492 1052 ntTSL 59.11□□□□□ -0.954e-6■■■□□ 15.2
SUB1P53999 NCAPD2-202ENST00000382457 2844 ntTSL 58.46□□□□□ -1.054e-6■■■□□ 15.2
SUB1P53999 EIF3E-204ENST00000518442 1285 ntTSL 1 (best)6.81□□□□□ -1.323e-14■■■□□ 15.2
SUB1P53999 EIF3E-203ENST00000518345 558 ntTSL 36.64□□□□□ -1.353e-14■■■□□ 15.2
SUB1P53999 EIF3E-211ENST00000521440 746 ntTSL 1 (best)5.31□□□□□ -1.563e-14■■■□□ 15.2
SUB1P53999 EIF3E-215ENST00000522445 841 ntTSL 34.76□□□□□ -1.653e-14■■■□□ 15.2
SUB1P53999 EIF3E-216ENST00000522887 575 ntTSL 44.58□□□□□ -1.683e-14■■■□□ 15.2
SUB1P53999 EIF3E-202ENST00000518100 687 ntTSL 54.15□□□□□ -1.753e-14■■■□□ 15.2
SUB1P53999 EIF3E-205ENST00000518634 545 ntTSL 53.14□□□□□ -1.913e-14■■■□□ 15.2
SUB1P53999 EIF3E-210ENST00000521297 223 ntTSL 51.81□□□□□ -2.123e-14■■■□□ 15.2
SUB1P53999 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.491e-6■■■□□ 15.2
SUB1P53999 CD63-205ENST00000548117 499 ntTSL 28.92□□□□□ -0.987e-8■■■□□ 15.2
SUB1P53999 CD63-212ENST00000552067 621 ntTSL 5 BASIC8.92□□□□□ -0.987e-8■■■□□ 15.2
SUB1P53999 CD63-207ENST00000548898 727 ntTSL 2 BASIC8.92□□□□□ -0.987e-8■■■□□ 15.2
SUB1P53999 CD63-216ENST00000555199 230 ntTSL 28.46□□□□□ -1.067e-8■■■□□ 15.2
SUB1P53999 CD63-206ENST00000548160 648 ntTSL 2 BASIC6.18□□□□□ -1.427e-8■■■□□ 15.2
SUB1P53999 RAB1A-205ENST00000494188 771 ntTSL 217.54■□□□□ 0.42e-9■■■□□ 15.2
SUB1P53999 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.51■□□□□ 0.232e-9■■■□□ 15.2
SUB1P53999 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC13.94□□□□□ -0.182e-9■■■□□ 15.2
SUB1P53999 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.52e-9■■■□□ 15.2
SUB1P53999 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC10.67□□□□□ -0.72e-9■■■□□ 15.2
SUB1P53999 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC11.9□□□□□ -0.51e-6■■■□□ 15.1
SUB1P53999 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC10.1□□□□□ -0.791e-6■■■□□ 15.1
SUB1P53999 NOP16-210ENST00000619979 963 ntTSL 5 BASIC9.18□□□□□ -0.941e-6■■■□□ 15.1
SUB1P53999 NOP16-207ENST00000614830 1258 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.991e-6■■■□□ 15.1
SUB1P53999 NOP16-208ENST00000616685 472 ntTSL 3 BASIC7.56□□□□□ -1.21e-6■■■□□ 15.1
SUB1P53999 TTC1-202ENST00000518560 543 ntTSL 57.05□□□□□ -1.281e-6■■■□□ 15.1
Retrieved 100 of 11,644 protein–RNA pairs in 124.7 ms