RNA–Protein interactions for RNA: ENST00000560816.5

ETFA-217, Transcript of electron transfer flavoprotein subunit alpha, humanhuman

TSL 3

Gene ETFA, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ETFA-217ENST00000560816 NISCHQ9Y2I1 1504 aa17.91■□□□□ 0.46
ETFA-217ENST00000560816 CCDC180Q9P1Z9 1646 aa15.74■□□□□ 0.11
ETFA-217ENST00000560816 AEBP2Q6ZN18 517 aaPredicted RBP15.47■□□□□ 0.07
ETFA-217ENST00000560816 CHIC1Q5VXU3 224 aa15.4■□□□□ 0.06
ETFA-217ENST00000560816 ABCC9O60706 1549 aa15.14■□□□□ 0.01
ETFA-217ENST00000560816 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
ETFA-217ENST00000560816 DCAF8L2P0C7V8 631 aa14.85□□□□□ -0.03
ETFA-217ENST00000560816 DCAF1Q9Y4B6 1507 aa14.83□□□□□ -0.04
ETFA-217ENST00000560816 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.04
ETFA-217ENST00000560816 NACADO15069 1562 aa14.74□□□□□ -0.05
ETFA-217ENST00000560816 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
ETFA-217ENST00000560816 SCRIBQ14160 1630 aa14.41□□□□□ -0.1
ETFA-217ENST00000560816 SHROOM4Q9ULL8 1493 aa14.38□□□□□ -0.11
ETFA-217ENST00000560816 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
ETFA-217ENST00000560816 BICRAQ9NZM4 1560 aa14.22□□□□□ -0.13
ETFA-217ENST00000560816 PABPN1Q86U42 306 aaKnown RBP eCLIP14.21□□□□□ -0.13
ETFA-217ENST00000560816 CECR2Q9BXF3 1484 aa13.93□□□□□ -0.18
ETFA-217ENST00000560816 BAZ1AQ9NRL2 1556 aaPredicted RBP13.86□□□□□ -0.19
ETFA-217ENST00000560816 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.2
ETFA-217ENST00000560816 MROH2BQ7Z745 1585 aa13.81□□□□□ -0.2
ETFA-217ENST00000560816 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
ETFA-217ENST00000560816 RSF1Q96T23 1441 aaPredicted RBP13.79□□□□□ -0.2
ETFA-217ENST00000560816 SUPT5HO00267 1087 aaKnown RBP13.7□□□□□ -0.22
ETFA-217ENST00000560816 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
ETFA-217ENST00000560816 SMARCA2P51531 1590 aa13.67□□□□□ -0.22
ETFA-217ENST00000560816 PEG3Q9GZU2 1588 aa13.67□□□□□ -0.22
ETFA-217ENST00000560816 CC2D2AQ9P2K1 1620 aa13.67□□□□□ -0.22
ETFA-217ENST00000560816 WIZO95785 1651 aa13.63□□□□□ -0.23
ETFA-217ENST00000560816 NCAPD3P42695 1498 aa13.62□□□□□ -0.23
ETFA-217ENST00000560816 PHF23Q9BUL5 403 aaPredicted RBP13.59□□□□□ -0.23
ETFA-217ENST00000560816 DNAJC5BQ9UF47 199 aa13.59□□□□□ -0.23
ETFA-217ENST00000560816 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
ETFA-217ENST00000560816 HMGXB3Q12766 1538 aa13.58□□□□□ -0.24
ETFA-217ENST00000560816 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
ETFA-217ENST00000560816 CCDC88BA6NC98 1476 aa13.4□□□□□ -0.26
ETFA-217ENST00000560816 CADPSQ9ULU8 1353 aa13.25□□□□□ -0.29
ETFA-217ENST00000560816 CFTRP13569 1480 aa13.23□□□□□ -0.29
ETFA-217ENST00000560816 NESP48681 1621 aa13.19□□□□□ -0.3
ETFA-217ENST00000560816 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
ETFA-217ENST00000560816 PDS5BQ9NTI5 1447 aa13.12□□□□□ -0.31
ETFA-217ENST00000560816 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
ETFA-217ENST00000560816 SENP3Q9H4L4 574 aaPredicted RBP13.06□□□□□ -0.32
ETFA-217ENST00000560816 CEP164Q9UPV0 1460 aa13.05□□□□□ -0.32
ETFA-217ENST00000560816 PRDM2Q13029 1718 aa13.05□□□□□ -0.32
ETFA-217ENST00000560816 ERCC6Q03468 1493 aa13.03□□□□□ -0.32
ETFA-217ENST00000560816 ABCC8Q09428 1581 aa13□□□□□ -0.33
ETFA-217ENST00000560816 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
ETFA-217ENST00000560816 KIF21AQ7Z4S6 1674 aa12.98□□□□□ -0.33
ETFA-217ENST00000560816 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
ETFA-217ENST00000560816 URB2Q14146 1524 aaKnown RBP12.94□□□□□ -0.34
ETFA-217ENST00000560816 CUX1P39880 1505 aa12.93□□□□□ -0.34
ETFA-217ENST00000560816 SYNJ1O43426 1573 aa12.92□□□□□ -0.34
ETFA-217ENST00000560816 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
ETFA-217ENST00000560816 TRIM41Q8WV44 630 aa12.92□□□□□ -0.34
ETFA-217ENST00000560816 TOPBP1Q92547 1522 aa12.92□□□□□ -0.34
ETFA-217ENST00000560816 TOP2BQ02880 1626 aa12.9□□□□□ -0.34
ETFA-217ENST00000560816 THOC2Q8NI27 1593 aaKnown RBP12.9□□□□□ -0.35
ETFA-217ENST00000560816 WDR62O43379 1518 aa12.89□□□□□ -0.35
ETFA-217ENST00000560816 BIVM-ERCC5R4GMW8 1640 aa12.88□□□□□ -0.35
ETFA-217ENST00000560816 FGD5Q6ZNL6 1462 aa12.85□□□□□ -0.35
ETFA-217ENST00000560816 POLA1P09884 1462 aaPredicted RBP12.84□□□□□ -0.35
ETFA-217ENST00000560816 SOGA1O94964 1423 aa12.79□□□□□ -0.36
ETFA-217ENST00000560816 CUX2O14529 1486 aa12.78□□□□□ -0.36
ETFA-217ENST00000560816 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
ETFA-217ENST00000560816 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
ETFA-217ENST00000560816 ABCA10Q8WWZ4 1543 aa12.74□□□□□ -0.37
ETFA-217ENST00000560816 TARBP1Q13395 1621 aaKnown RBP12.73□□□□□ -0.37
ETFA-217ENST00000560816 KIF27Q86VH2 1401 aa12.71□□□□□ -0.38
ETFA-217ENST00000560816 TDRD9Q8NDG6 1382 aaKnown RBP12.69□□□□□ -0.38
ETFA-217ENST00000560816 EEA1Q15075 1411 aa12.68□□□□□ -0.38
ETFA-217ENST00000560816 WDR97A6NE52 1622 aa12.67□□□□□ -0.38
ETFA-217ENST00000560816 RUSC2Q8N2Y8 1516 aa12.67□□□□□ -0.38
ETFA-217ENST00000560816 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
ETFA-217ENST00000560816 FAM9AQ8IZU1 332 aaPredicted RBP12.65□□□□□ -0.38
ETFA-217ENST00000560816 AQRO60306 1485 aaKnown RBP eCLIP12.65□□□□□ -0.38
ETFA-217ENST00000560816 ABCA5Q8WWZ7 1642 aa12.64□□□□□ -0.39
ETFA-217ENST00000560816 PLPPR3Q6T4P5 718 aa12.64□□□□□ -0.39
ETFA-217ENST00000560816 GAPVD1Q14C86 1478 aa12.64□□□□□ -0.39
ETFA-217ENST00000560816 EIF4G3O43432 1585 aaKnown RBP12.62□□□□□ -0.39
ETFA-217ENST00000560816 CSRNP3Q8WYN3 585 aa12.61□□□□□ -0.39
ETFA-217ENST00000560816 GRIN2BQ13224 1484 aa12.6□□□□□ -0.39
ETFA-217ENST00000560816 IGF1RP08069 1367 aa12.6□□□□□ -0.39
ETFA-217ENST00000560816 ERICH3Q5RHP9 1530 aa12.58□□□□□ -0.4
ETFA-217ENST00000560816 SNAPC4Q5SXM2 1469 aa12.54□□□□□ -0.4
ETFA-217ENST00000560816 CARMIL1Q5VZK9 1371 aa12.54□□□□□ -0.4
ETFA-217ENST00000560816 MAGI1Q96QZ7 1491 aaPredicted RBP12.53□□□□□ -0.4
ETFA-217ENST00000560816 PRXQ9BXM0 1461 aa12.53□□□□□ -0.4
ETFA-217ENST00000560816 PBRM1Q86U86 1689 aa12.53□□□□□ -0.4
ETFA-217ENST00000560816 FHAD1B1AJZ9 1412 aa12.53□□□□□ -0.4
ETFA-217ENST00000560816 ADAMTS12P58397 1594 aa12.51□□□□□ -0.41
ETFA-217ENST00000560816 CUL7Q14999 1698 aa12.51□□□□□ -0.41
ETFA-217ENST00000560816 KIF21BO75037 1637 aa12.49□□□□□ -0.41
ETFA-217ENST00000560816 RAPGEF2Q9Y4G8 1499 aa12.49□□□□□ -0.41
ETFA-217ENST00000560816 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
ETFA-217ENST00000560816 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
ETFA-217ENST00000560816 CHMP7Q8WUX9 453 aaPredicted RBP12.46□□□□□ -0.41
ETFA-217ENST00000560816 EHMT2Q96KQ7 1210 aa12.45□□□□□ -0.42
ETFA-217ENST00000560816 GRIN2AQ12879 1464 aa12.45□□□□□ -0.42
ETFA-217ENST00000560816 FBLN2P98095 1184 aa12.44□□□□□ -0.42
ETFA-217ENST00000560816 LOC105371045A0A1W2PR82 267 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms