RNA–Protein interactions for RNA: ENST00000231238.9

TTC1-201, Transcript of tetratricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TTC1, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC1-201ENST00000231238 AEBP2Q6ZN18 517 aaPredicted RBP31.19■■■□□ 2.58
TTC1-201ENST00000231238 CHIC1Q5VXU3 224 aa30.15■■■□□ 2.42
TTC1-201ENST00000231238 PHF23Q9BUL5 403 aaPredicted RBP26.56■■□□□ 1.84
TTC1-201ENST00000231238 SENP3Q9H4L4 574 aaPredicted RBP26.37■■□□□ 1.81
TTC1-201ENST00000231238 FOXD1Q16676 465 aa24.59■■□□□ 1.53
TTC1-201ENST00000231238 PLPPR3Q6T4P5 718 aa24.32■■□□□ 1.48
TTC1-201ENST00000231238 PPP6R1Q9UPN7 881 aa23.53■■□□□ 1.36
TTC1-201ENST00000231238 ADRA2BP18089 450 aa23.46■■□□□ 1.35
TTC1-201ENST00000231238 PIAS4Q8N2W9 510 aaPredicted RBP23.07■■□□□ 1.28
TTC1-201ENST00000231238 MSH5O43196 834 aa22.66■■□□□ 1.22
TTC1-201ENST00000231238 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
TTC1-201ENST00000231238 PPP4R3CPQ6ZMV5 832 aa21.45■■□□□ 1.02
TTC1-201ENST00000231238 MAPK8IP2Q13387 824 aaPredicted RBP21.39■■□□□ 1.01
TTC1-201ENST00000231238 SCAF1Q9H7N4 1312 aaKnown RBP21.33■■□□□ 1
TTC1-201ENST00000231238 POTEDQ86YR6 584 aa21.14■□□□□ 0.98
TTC1-201ENST00000231238 DMRT2Q9Y5R5 561 aa21.05■□□□□ 0.96
TTC1-201ENST00000231238 CNKSR2Q8WXI2 1034 aa20.87■□□□□ 0.93
TTC1-201ENST00000231238 NCBP3Q53F19 620 aaKnown RBP20.73■□□□□ 0.91
TTC1-201ENST00000231238 KCNA4P22459 653 aa20.72■□□□□ 0.91
TTC1-201ENST00000231238 HOXD11P31277 338 aaPredicted RBP20.54■□□□□ 0.88
TTC1-201ENST00000231238 NPM3O75607 178 aaKnown RBP20.53■□□□□ 0.88
TTC1-201ENST00000231238 RNF216Q9NWF9 866 aaPredicted RBP20.52■□□□□ 0.88
TTC1-201ENST00000231238 DCAF8L1A6NGE4 600 aa20.11■□□□□ 0.81
TTC1-201ENST00000231238 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
TTC1-201ENST00000231238 SLC4A1APQ9BWU0 796 aaKnown RBP19.62■□□□□ 0.73
TTC1-201ENST00000231238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.51■□□□□ 0.712e-8■■□□□ 12.6
TTC1-201ENST00000231238 SLC4A2P04920 1241 aa19.48■□□□□ 0.71
TTC1-201ENST00000231238 RNF39Q9H2S5 420 aa19.47■□□□□ 0.71
TTC1-201ENST00000231238 U3KPZ7 1027 aaPredicted RBP19.24■□□□□ 0.67
TTC1-201ENST00000231238 C1QBPQ07021 282 aaKnown RBP19.17■□□□□ 0.66
TTC1-201ENST00000231238 ZBTB22O15209 634 aa19.1■□□□□ 0.65
TTC1-201ENST00000231238 CACNB1Q02641 598 aaPredicted RBP19.09■□□□□ 0.65
TTC1-201ENST00000231238 FOXD4L1Q9NU39 408 aa19.07■□□□□ 0.64
TTC1-201ENST00000231238 CCDC180Q9P1Z9 1646 aa19.01■□□□□ 0.63
TTC1-201ENST00000231238 MYCNP04198 464 aaPredicted RBP18.91■□□□□ 0.62
TTC1-201ENST00000231238 EHMT2Q96KQ7 1210 aa18.81■□□□□ 0.6
TTC1-201ENST00000231238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
TTC1-201ENST00000231238 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
TTC1-201ENST00000231238 SPINK5Q9NQ38 1064 aaPredicted RBP18.79■□□□□ 0.6
TTC1-201ENST00000231238 CSRNP3Q8WYN3 585 aa18.77■□□□□ 0.59
TTC1-201ENST00000231238 SAMD1Q6SPF0 538 aaPredicted RBP18.74■□□□□ 0.59
TTC1-201ENST00000231238 CAPN15O75808 1086 aa18.65■□□□□ 0.58
TTC1-201ENST00000231238 APLP2Q06481 763 aa18.61■□□□□ 0.57
TTC1-201ENST00000231238 ATF5Q9Y2D1 282 aaPredicted RBP18.54■□□□□ 0.56
TTC1-201ENST00000231238 TRHP20396 242 aaPredicted RBP18.52■□□□□ 0.56
TTC1-201ENST00000231238 ZNF219Q9P2Y4 722 aaPredicted RBP18.46■□□□□ 0.55
TTC1-201ENST00000231238 DSG3P32926 999 aa18.46■□□□□ 0.54
TTC1-201ENST00000231238 ATXN8OSP0DMR3 200 aa18.4■□□□□ 0.54
TTC1-201ENST00000231238 ABCB7O75027 752 aa18.33■□□□□ 0.52
TTC1-201ENST00000231238 ZCCHC6Q5VYS8 1495 aaKnown RBP18.28■□□□□ 0.52
TTC1-201ENST00000231238 DCAF8L2P0C7V8 631 aa18.26■□□□□ 0.51
TTC1-201ENST00000231238 POLA2Q14181 598 aa18.19■□□□□ 0.5
TTC1-201ENST00000231238 ABCC9O60706 1549 aa18.13■□□□□ 0.49
TTC1-201ENST00000231238 DCAF1Q9Y4B6 1507 aa17.99■□□□□ 0.47
TTC1-201ENST00000231238 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
TTC1-201ENST00000231238 MYO15BQ96JP2 1530 aa17.78■□□□□ 0.44
TTC1-201ENST00000231238 ZBTB12Q9Y330 459 aaPredicted RBP17.76■□□□□ 0.43
TTC1-201ENST00000231238 NACADO15069 1562 aa17.76■□□□□ 0.43
TTC1-201ENST00000231238 MKRN4PQ13434 485 aaPredicted RBP17.71■□□□□ 0.43
TTC1-201ENST00000231238 RB1CC1Q8TDY2 1594 aa17.65■□□□□ 0.42
TTC1-201ENST00000231238 FBLN2P98095 1184 aa17.63■□□□□ 0.41
TTC1-201ENST00000231238 OSCARQ8IYS5 282 aa17.58■□□□□ 0.41
TTC1-201ENST00000231238 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
TTC1-201ENST00000231238 RBM42Q9BTD8 480 aaKnown RBP17.49■□□□□ 0.39
TTC1-201ENST00000231238 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
TTC1-201ENST00000231238 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
TTC1-201ENST00000231238 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
TTC1-201ENST00000231238 AKT1S1Q96B36 256 aa17.26■□□□□ 0.35
TTC1-201ENST00000231238 ZNF692Q9BU19 519 aaPredicted RBP17.24■□□□□ 0.35
TTC1-201ENST00000231238 SUPT5HO00267 1087 aaKnown RBP17.23■□□□□ 0.35
TTC1-201ENST00000231238 SSUH2Q9Y2M2 353 aa17.21■□□□□ 0.35
TTC1-201ENST00000231238 UNC13AQ9UPW8 1703 aa17.15■□□□□ 0.34
TTC1-201ENST00000231238 REM2Q8IYK8 340 aaPredicted RBP17.14■□□□□ 0.33
TTC1-201ENST00000231238 SPDYE4A6NLX3 237 aa17.12■□□□□ 0.33
TTC1-201ENST00000231238 PABPN1Q86U42 306 aaKnown RBP eCLIP17.11■□□□□ 0.33
TTC1-201ENST00000231238 BICRAQ9NZM4 1560 aa17■□□□□ 0.31
TTC1-201ENST00000231238 PITPNM1O00562 1244 aa16.95■□□□□ 0.3
TTC1-201ENST00000231238 CECR2Q9BXF3 1484 aa16.93■□□□□ 0.3
TTC1-201ENST00000231238 FKBP8Q14318 412 aa16.93■□□□□ 0.3
TTC1-201ENST00000231238 CHRDL2Q6WN34 429 aa16.92■□□□□ 0.3
TTC1-201ENST00000231238 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
TTC1-201ENST00000231238 BAZ1AQ9NRL2 1556 aaPredicted RBP16.87■□□□□ 0.29
TTC1-201ENST00000231238 SPDYE1Q8NFV5 336 aaPredicted RBP16.86■□□□□ 0.29
TTC1-201ENST00000231238 PROM2Q8N271 834 aa16.85■□□□□ 0.29
TTC1-201ENST00000231238 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.28
TTC1-201ENST00000231238 CLEC11AQ9Y240 323 aa16.82■□□□□ 0.28
TTC1-201ENST00000231238 SMARCA4P51532 1647 aa16.77■□□□□ 0.27
TTC1-201ENST00000231238 WIZO95785 1651 aa16.69■□□□□ 0.26
TTC1-201ENST00000231238 FXR2P51116 673 aaKnown RBP eCLIP16.68■□□□□ 0.26
TTC1-201ENST00000231238 PIP4P2Q8N4L2 257 aa16.68■□□□□ 0.26
TTC1-201ENST00000231238 POTEHQ6S545 545 aa16.67■□□□□ 0.26
TTC1-201ENST00000231238 PRR29P0C7W0 189 aa16.62■□□□□ 0.25
TTC1-201ENST00000231238 STAG3Q9UJ98 1225 aa16.61■□□□□ 0.25
TTC1-201ENST00000231238 EIF4G1Q04637 1599 aaKnown RBP16.56■□□□□ 0.24
TTC1-201ENST00000231238 TOP2AP11388 1531 aaKnown RBP16.54■□□□□ 0.24
TTC1-201ENST00000231238 SMARCA2P51531 1590 aa16.54■□□□□ 0.24
TTC1-201ENST00000231238 ATAD2BQ9ULI0 1458 aa16.51■□□□□ 0.23
TTC1-201ENST00000231238 PRKAR2AP13861 404 aaKnown RBP16.5■□□□□ 0.23
TTC1-201ENST00000231238 PEG3Q9GZU2 1588 aa16.5■□□□□ 0.23
TTC1-201ENST00000231238 CHADLQ6NUI6 762 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms