RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 AEBP2Q6ZN18 517 aaPredicted RBP15.29■□□□□ 0.04
USP48-206ENST00000464577 CHIC1Q5VXU3 224 aa14.51□□□□□ -0.09
USP48-206ENST00000464577 NISCHQ9Y2I1 1504 aa14.49□□□□□ -0.09
USP48-206ENST00000464577 POTEDQ86YR6 584 aa13.46□□□□□ -0.25
USP48-206ENST00000464577 SENP3Q9H4L4 574 aaPredicted RBP13.43□□□□□ -0.26
USP48-206ENST00000464577 PHF23Q9BUL5 403 aaPredicted RBP13□□□□□ -0.33
USP48-206ENST00000464577 FOXD1Q16676 465 aa12.47□□□□□ -0.41
USP48-206ENST00000464577 SHROOM4Q9ULL8 1493 aa12.39□□□□□ -0.43
USP48-206ENST00000464577 ZCCHC6Q5VYS8 1495 aaKnown RBP12.34□□□□□ -0.43
USP48-206ENST00000464577 CCDC180Q9P1Z9 1646 aa12.27□□□□□ -0.45
USP48-206ENST00000464577 SUPT5HO00267 1087 aaKnown RBP12.26□□□□□ -0.45
USP48-206ENST00000464577 MSH5O43196 834 aa12.25□□□□□ -0.45
USP48-206ENST00000464577 HRCP23327 699 aa12.23□□□□□ -0.45
USP48-206ENST00000464577 MYO15BQ96JP2 1530 aa12.17□□□□□ -0.46
USP48-206ENST00000464577 DCAF1Q9Y4B6 1507 aa12.02□□□□□ -0.49
USP48-206ENST00000464577 PCGF6Q9BYE7 350 aa11.96□□□□□ -0.5
USP48-206ENST00000464577 PPARGC1BQ86YN6 1023 aaKnown RBP11.82□□□□□ -0.52
USP48-206ENST00000464577 TRIM26Q12899 539 aaPredicted RBP11.75□□□□□ -0.53
USP48-206ENST00000464577 DCAF8L2P0C7V8 631 aa11.72□□□□□ -0.53
USP48-206ENST00000464577 ABCC9O60706 1549 aa11.71□□□□□ -0.54
USP48-206ENST00000464577 LOC105371045A0A1W2PR82 267 aa11.7□□□□□ -0.54
USP48-206ENST00000464577 ZEB1P37275 1124 aaPredicted RBP11.67□□□□□ -0.54
USP48-206ENST00000464577 PELP1Q8IZL8 1130 aaKnown RBP11.61□□□□□ -0.55
USP48-206ENST00000464577 RSF1Q96T23 1441 aaPredicted RBP11.55□□□□□ -0.56
USP48-206ENST00000464577 RB1CC1Q8TDY2 1594 aa11.51□□□□□ -0.57
USP48-206ENST00000464577 PLPPR3Q6T4P5 718 aa11.5□□□□□ -0.57
USP48-206ENST00000464577 PIAS4Q8N2W9 510 aaPredicted RBP11.45□□□□□ -0.58
USP48-206ENST00000464577 TRIM41Q8WV44 630 aa11.45□□□□□ -0.58
USP48-206ENST00000464577 SCRIBQ14160 1630 aa11.44□□□□□ -0.58
USP48-206ENST00000464577 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.58
USP48-206ENST00000464577 FAM9AQ8IZU1 332 aaPredicted RBP11.29□□□□□ -0.6
USP48-206ENST00000464577 EIF4G1Q04637 1599 aaKnown RBP11.26□□□□□ -0.61
USP48-206ENST00000464577 NACADO15069 1562 aa11.25□□□□□ -0.61
USP48-206ENST00000464577 MROH2BQ7Z745 1585 aa11.25□□□□□ -0.61
USP48-206ENST00000464577 ACIN1Q9UKV3 1341 aaKnown RBP11.23□□□□□ -0.61
USP48-206ENST00000464577 BAZ1AQ9NRL2 1556 aaPredicted RBP11.23□□□□□ -0.61
USP48-206ENST00000464577 CECR2Q9BXF3 1484 aa11.22□□□□□ -0.61
USP48-206ENST00000464577 WRNQ14191 1432 aaPredicted RBP eCLIP11.2□□□□□ -0.62
USP48-206ENST00000464577 WIZO95785 1651 aa11.19□□□□□ -0.62
USP48-206ENST00000464577 CCER1Q8TC90 406 aaPredicted RBP11.16□□□□□ -0.62
USP48-206ENST00000464577 MYT1Q01538 1121 aa11.15□□□□□ -0.62
USP48-206ENST00000464577 CENPBP07199 599 aaPredicted RBP11.15□□□□□ -0.63
USP48-206ENST00000464577 NEUROD1Q13562 356 aa11.15□□□□□ -0.63
USP48-206ENST00000464577 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.14□□□□□ -0.63
USP48-206ENST00000464577 DIEXFQ68CQ4 756 aaKnown RBP11.12□□□□□ -0.63
USP48-206ENST00000464577 EHMT2Q96KQ7 1210 aa11.12□□□□□ -0.63
USP48-206ENST00000464577 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
USP48-206ENST00000464577 CEP162Q5TB80 1403 aa11.07□□□□□ -0.64
USP48-206ENST00000464577 EEA1Q15075 1411 aa11.06□□□□□ -0.64
USP48-206ENST00000464577 GTF3C3Q9Y5Q9 886 aa11.06□□□□□ -0.64
USP48-206ENST00000464577 TNIKQ9UKE5 1360 aa11.06□□□□□ -0.64
USP48-206ENST00000464577 ADRA2BP18089 450 aa11.05□□□□□ -0.64
USP48-206ENST00000464577 PPP6R1Q9UPN7 881 aa11.04□□□□□ -0.64
USP48-206ENST00000464577 CCDC88BA6NC98 1476 aa11.03□□□□□ -0.64
USP48-206ENST00000464577 CACNB1Q02641 598 aaPredicted RBP11.02□□□□□ -0.64
USP48-206ENST00000464577 SMARCA2P51531 1590 aa11.01□□□□□ -0.65
USP48-206ENST00000464577 ABCC8Q09428 1581 aa11.01□□□□□ -0.65
USP48-206ENST00000464577 ZNF316A6NFI3 1004 aaPredicted RBP10.99□□□□□ -0.65
USP48-206ENST00000464577 SMARCA4P51532 1647 aa10.99□□□□□ -0.65
USP48-206ENST00000464577 GOLGA3Q08378 1498 aa10.96□□□□□ -0.66
USP48-206ENST00000464577 SOGA1O94964 1423 aa10.96□□□□□ -0.66
USP48-206ENST00000464577 CSRNP3Q8WYN3 585 aa10.93□□□□□ -0.66
USP48-206ENST00000464577 KIF21BO75037 1637 aa10.9□□□□□ -0.67
USP48-206ENST00000464577 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
USP48-206ENST00000464577 CEP164Q9UPV0 1460 aa10.87□□□□□ -0.67
USP48-206ENST00000464577 TTBK1Q5TCY1 1321 aaPredicted RBP10.86□□□□□ -0.67
USP48-206ENST00000464577 UBTFP17480 764 aaKnown RBP10.85□□□□□ -0.67
USP48-206ENST00000464577 BAZ1BQ9UIG0 1483 aaKnown RBP10.84□□□□□ -0.67
USP48-206ENST00000464577 VPS8Q8N3P4 1428 aa10.83□□□□□ -0.68
USP48-206ENST00000464577 MIER1Q8N108 512 aa10.82□□□□□ -0.68
USP48-206ENST00000464577 PEG3Q9GZU2 1588 aa10.81□□□□□ -0.68
USP48-206ENST00000464577 UNC13AQ9UPW8 1703 aa10.81□□□□□ -0.68
USP48-206ENST00000464577 CLIP1P30622 1438 aa10.81□□□□□ -0.68
USP48-206ENST00000464577 CLSPNQ9HAW4 1339 aa10.81□□□□□ -0.68
USP48-206ENST00000464577 YTHDC1Q96MU7 727 aaKnown RBP10.79□□□□□ -0.68
USP48-206ENST00000464577 SYNJ1O43426 1573 aa10.78□□□□□ -0.68
USP48-206ENST00000464577 HNRNPUL2Q1KMD3 747 aaKnown RBP10.75□□□□□ -0.69
USP48-206ENST00000464577 RAPGEF2Q9Y4G8 1499 aa10.7□□□□□ -0.7
USP48-206ENST00000464577 APLP2Q06481 763 aa10.7□□□□□ -0.7
USP48-206ENST00000464577 DHX57Q6P158 1386 aaKnown RBP10.68□□□□□ -0.7
USP48-206ENST00000464577 ERICH3Q5RHP9 1530 aa10.68□□□□□ -0.7
USP48-206ENST00000464577 BICRAQ9NZM4 1560 aa10.67□□□□□ -0.7
USP48-206ENST00000464577 TOP2BQ02880 1626 aa10.66□□□□□ -0.7
USP48-206ENST00000464577 CUX2O14529 1486 aa10.65□□□□□ -0.7
USP48-206ENST00000464577 BIVM-ERCC5R4GMW8 1640 aa10.64□□□□□ -0.71
USP48-206ENST00000464577 SUPT16HQ9Y5B9 1047 aaKnown RBP10.63□□□□□ -0.71
USP48-206ENST00000464577 ARAP1Q96P48 1450 aa10.63□□□□□ -0.71
USP48-206ENST00000464577 RRBP1Q9P2E9 1410 aaKnown RBP10.63□□□□□ -0.71
USP48-206ENST00000464577 ATAD2BQ9ULI0 1458 aa10.62□□□□□ -0.71
USP48-206ENST00000464577 PRXQ9BXM0 1461 aa10.62□□□□□ -0.71
USP48-206ENST00000464577 TSHZ2Q9NRE2 1034 aa10.53□□□□□ -0.72
USP48-206ENST00000464577 CCNB3Q8WWL7 1395 aa10.52□□□□□ -0.72
USP48-206ENST00000464577 KANK4Q5T7N3 995 aaPredicted RBP10.51□□□□□ -0.73
USP48-206ENST00000464577 PABPN1Q86U42 306 aaKnown RBP eCLIP10.5□□□□□ -0.73
USP48-206ENST00000464577 MAP3K1Q13233 1512 aa10.5□□□□□ -0.73
USP48-206ENST00000464577 MAPKBP1O60336 1514 aa10.49□□□□□ -0.73
USP48-206ENST00000464577 KIF27Q86VH2 1401 aa10.48□□□□□ -0.73
USP48-206ENST00000464577 ANP32EQ9BTT0 268 aa10.48□□□□□ -0.73
USP48-206ENST00000464577 ARHGAP35Q9NRY4 1499 aa10.48□□□□□ -0.73
USP48-206ENST00000464577 RANGAP1P46060 587 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms