RNA–Protein interactions for RNA: ENST00000527265.1

CLNS1A-208, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 2

Gene CLNS1A, Length 620 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-208ENST00000527265 AEBP2Q6ZN18 517 aaPredicted RBP21.45■■□□□ 1.02
CLNS1A-208ENST00000527265 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
CLNS1A-208ENST00000527265 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
CLNS1A-208ENST00000527265 PHF23Q9BUL5 403 aaPredicted RBP18.17■□□□□ 0.5
CLNS1A-208ENST00000527265 FOXD1Q16676 465 aa17.23■□□□□ 0.35
CLNS1A-208ENST00000527265 POTEDQ86YR6 584 aa16.69■□□□□ 0.26
CLNS1A-208ENST00000527265 MSH5O43196 834 aa16.44■□□□□ 0.22
CLNS1A-208ENST00000527265 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
CLNS1A-208ENST00000527265 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
CLNS1A-208ENST00000527265 PPP6R1Q9UPN7 881 aa15.7■□□□□ 0.1
CLNS1A-208ENST00000527265 ADRA2BP18089 450 aa15.68■□□□□ 0.1
CLNS1A-208ENST00000527265 DMRT2Q9Y5R5 561 aa14.58□□□□□ -0.08
CLNS1A-208ENST00000527265 SCAF1Q9H7N4 1312 aaKnown RBP14.53□□□□□ -0.08
CLNS1A-208ENST00000527265 MAPK8IP2Q13387 824 aaPredicted RBP14.5□□□□□ -0.09
CLNS1A-208ENST00000527265 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
CLNS1A-208ENST00000527265 DCAF8L1A6NGE4 600 aa14.12□□□□□ -0.15
CLNS1A-208ENST00000527265 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
CLNS1A-208ENST00000527265 HOXD11P31277 338 aaPredicted RBP13.85□□□□□ -0.19
CLNS1A-208ENST00000527265 PPP4R3CPQ6ZMV5 832 aa13.81□□□□□ -0.2
CLNS1A-208ENST00000527265 C1QBPQ07021 282 aaKnown RBP13.73□□□□□ -0.21
CLNS1A-208ENST00000527265 CNKSR2Q8WXI2 1034 aa13.69□□□□□ -0.22
CLNS1A-208ENST00000527265 RNF216Q9NWF9 866 aaPredicted RBP13.67□□□□□ -0.22
CLNS1A-208ENST00000527265 DNAJC5BQ9UF47 199 aa13.51□□□□□ -0.25
CLNS1A-208ENST00000527265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.3□□□□□ -0.281e-22■■□□□ 12.3
CLNS1A-208ENST00000527265 NCBP3Q53F19 620 aaKnown RBP13.26□□□□□ -0.29
CLNS1A-208ENST00000527265 POTEHQ6S545 545 aa13.03□□□□□ -0.32
CLNS1A-208ENST00000527265 NPM3O75607 178 aaKnown RBP12.93□□□□□ -0.34
CLNS1A-208ENST00000527265 CAPN15O75808 1086 aa12.92□□□□□ -0.34
CLNS1A-208ENST00000527265 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
CLNS1A-208ENST00000527265 DSG3P32926 999 aa12.85□□□□□ -0.35
CLNS1A-208ENST00000527265 SPINK5Q9NQ38 1064 aaPredicted RBP12.8□□□□□ -0.36
CLNS1A-208ENST00000527265 APLP2Q06481 763 aa12.68□□□□□ -0.38
CLNS1A-208ENST00000527265 ZNF219Q9P2Y4 722 aaPredicted RBP12.59□□□□□ -0.39
CLNS1A-208ENST00000527265 TRHP20396 242 aaPredicted RBP12.58□□□□□ -0.4
CLNS1A-208ENST00000527265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.41
CLNS1A-208ENST00000527265 HNRNPUL2Q1KMD3 747 aaKnown RBP12.52□□□□□ -0.41
CLNS1A-208ENST00000527265 ABCB7O75027 752 aa12.51□□□□□ -0.41
CLNS1A-208ENST00000527265 RBM42Q9BTD8 480 aaKnown RBP12.42□□□□□ -0.42
CLNS1A-208ENST00000527265 SLC4A2P04920 1241 aa12.41□□□□□ -0.42
CLNS1A-208ENST00000527265 SAMD1Q6SPF0 538 aaPredicted RBP12.38□□□□□ -0.43
CLNS1A-208ENST00000527265 KCNA4P22459 653 aa12.26□□□□□ -0.45
CLNS1A-208ENST00000527265 CHRDL2Q6WN34 429 aa12.24□□□□□ -0.45
CLNS1A-208ENST00000527265 POLA2Q14181 598 aa12.11□□□□□ -0.47
CLNS1A-208ENST00000527265 MYCNP04198 464 aaPredicted RBP12.05□□□□□ -0.48
CLNS1A-208ENST00000527265 SP7Q8TDD2 431 aaPredicted RBP12.02□□□□□ -0.49
CLNS1A-208ENST00000527265 AKT1S1Q96B36 256 aa11.97□□□□□ -0.49
CLNS1A-208ENST00000527265 ZBTB12Q9Y330 459 aaPredicted RBP11.95□□□□□ -0.5
CLNS1A-208ENST00000527265 REM2Q8IYK8 340 aaPredicted RBP11.81□□□□□ -0.52
CLNS1A-208ENST00000527265 HAX1O00165 279 aa11.8□□□□□ -0.52
CLNS1A-208ENST00000527265 PIP4P2Q8N4L2 257 aa11.8□□□□□ -0.52
CLNS1A-208ENST00000527265 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
CLNS1A-208ENST00000527265 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
CLNS1A-208ENST00000527265 FXR2P51116 673 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLNS1A-208ENST00000527265 FOXD4L1Q9NU39 408 aa11.66□□□□□ -0.54
CLNS1A-208ENST00000527265 ATF5Q9Y2D1 282 aaPredicted RBP11.65□□□□□ -0.54
CLNS1A-208ENST00000527265 SLC4A1APQ9BWU0 796 aaKnown RBP11.56□□□□□ -0.56
CLNS1A-208ENST00000527265 SPDYE2BA6NHP3 402 aa11.47□□□□□ -0.57
CLNS1A-208ENST00000527265 SPDYE6P0CI01 402 aa11.47□□□□□ -0.57
CLNS1A-208ENST00000527265 SPDYE2Q495Y8 402 aa11.47□□□□□ -0.57
CLNS1A-208ENST00000527265 FBLN2P98095 1184 aa11.45□□□□□ -0.58
CLNS1A-208ENST00000527265 EVX2Q03828 476 aa11.44□□□□□ -0.58
CLNS1A-208ENST00000527265 PRKAR2AP13861 404 aaKnown RBP11.42□□□□□ -0.58
CLNS1A-208ENST00000527265 SPDYE1Q8NFV5 336 aaPredicted RBP11.41□□□□□ -0.58
CLNS1A-208ENST00000527265 CLEC11AQ9Y240 323 aa11.41□□□□□ -0.58
CLNS1A-208ENST00000527265 ATXN8OSP0DMR3 200 aa11.36□□□□□ -0.59
CLNS1A-208ENST00000527265 C19orf67A6NJJ6 358 aa11.3□□□□□ -0.6
CLNS1A-208ENST00000527265 LHX8Q68G74 356 aa11.27□□□□□ -0.61
CLNS1A-208ENST00000527265 ZNF692Q9BU19 519 aaPredicted RBP11.27□□□□□ -0.61
CLNS1A-208ENST00000527265 GABBR2O75899 941 aa11.25□□□□□ -0.61
CLNS1A-208ENST00000527265 ZBTB22O15209 634 aa11.19□□□□□ -0.62
CLNS1A-208ENST00000527265 SSUH2Q9Y2M2 353 aa11.19□□□□□ -0.62
CLNS1A-208ENST00000527265 PRR29P0C7W0 189 aa11.16□□□□□ -0.62
CLNS1A-208ENST00000527265 CHADLQ6NUI6 762 aa11.14□□□□□ -0.63
CLNS1A-208ENST00000527265 MKRN4PQ13434 485 aaPredicted RBP11.11□□□□□ -0.63
CLNS1A-208ENST00000527265 CLCN6P51797 869 aa11.06□□□□□ -0.64
CLNS1A-208ENST00000527265 PABPN1Q86U42 306 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLNS1A-208ENST00000527265 CD44P16070 742 aaKnown RBP11.05□□□□□ -0.64
CLNS1A-208ENST00000527265 DCBLD2Q96PD2 775 aa10.98□□□□□ -0.65
CLNS1A-208ENST00000527265 PLSCR2Q9NRY7 297 aa10.98□□□□□ -0.65
CLNS1A-208ENST00000527265 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
CLNS1A-208ENST00000527265 POTEIP0CG38 1075 aa10.93□□□□□ -0.66
CLNS1A-208ENST00000527265 ZNF579Q8NAF0 562 aaKnown RBP10.83□□□□□ -0.68
CLNS1A-208ENST00000527265 ZRANB1Q9UGI0 708 aa10.82□□□□□ -0.68
CLNS1A-208ENST00000527265 PAK3O75914 559 aaPredicted RBP10.75□□□□□ -0.69
CLNS1A-208ENST00000527265 STAG3Q9UJ98 1225 aa10.74□□□□□ -0.69
CLNS1A-208ENST00000527265 GALR2O43603 387 aaPredicted RBP10.69□□□□□ -0.7
CLNS1A-208ENST00000527265 OTUD5Q96G74 571 aa10.66□□□□□ -0.7
CLNS1A-208ENST00000527265 CREBZFQ9NS37 354 aa10.66□□□□□ -0.7
CLNS1A-208ENST00000527265 POTEMA6NI47 508 aa10.65□□□□□ -0.7
CLNS1A-208ENST00000527265 NPM1P06748 294 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLNS1A-208ENST00000527265 POTEGQ6S5H5 508 aa10.59□□□□□ -0.71
CLNS1A-208ENST00000527265 PHF12Q96QT6 1004 aa10.57□□□□□ -0.72
CLNS1A-208ENST00000527265 POTEB2H3BUK9 544 aa10.56□□□□□ -0.72
CLNS1A-208ENST00000527265 PCDH10Q9P2E7 1040 aa10.56□□□□□ -0.72
CLNS1A-208ENST00000527265 MAMSTRQ6ZN01 415 aa10.51□□□□□ -0.73
CLNS1A-208ENST00000527265 SLC39A7Q92504 469 aa10.5□□□□□ -0.73
CLNS1A-208ENST00000527265 METRNQ9UJH8 293 aa10.5□□□□□ -0.73
CLNS1A-208ENST00000527265 SPDYE4A6NLX3 237 aa10.48□□□□□ -0.73
CLNS1A-208ENST00000527265 C7P10643 843 aa10.48□□□□□ -0.73
CLNS1A-208ENST00000527265 PELP1Q8IZL8 1130 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms