Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 AL158211.5-201ENST00000623583 2518 ntBASIC19.25■□□□□ 0.67
MSH3P20585 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 TREX1-205ENST00000625293 1783 ntBASIC19.25■□□□□ 0.67
MSH3P20585 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
MSH3P20585 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MSH3P20585 AP002982.1-201ENST00000492365 877 ntBASIC19.25■□□□□ 0.67
MSH3P20585 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
MSH3P20585 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
MSH3P20585 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH3P20585 AL135905.2-201ENST00000584934 1404 ntBASIC19.25■□□□□ 0.67
MSH3P20585 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.24■□□□□ 0.67
MSH3P20585 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.24■□□□□ 0.67
MSH3P20585 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.24■□□□□ 0.67
MSH3P20585 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.24■□□□□ 0.67
MSH3P20585 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.24■□□□□ 0.67
MSH3P20585 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.24■□□□□ 0.67
MSH3P20585 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.24■□□□□ 0.67
MSH3P20585 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.24■□□□□ 0.67
MSH3P20585 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH3P20585 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH3P20585 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.24■□□□□ 0.67
MSH3P20585 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSH3P20585 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH3P20585 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.23■□□□□ 0.67
MSH3P20585 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.23■□□□□ 0.67
MSH3P20585 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH3P20585 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
MSH3P20585 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH3P20585 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSH3P20585 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH3P20585 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.23■□□□□ 0.67
MSH3P20585 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH3P20585 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
MSH3P20585 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.22■□□□□ 0.67
MSH3P20585 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.22■□□□□ 0.67
MSH3P20585 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MSH3P20585 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
MSH3P20585 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH3P20585 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH3P20585 AC116562.4-201ENST00000641316 2276 ntBASIC19.22■□□□□ 0.67
MSH3P20585 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH3P20585 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH3P20585 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms