Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.328e-6■■■□□ 15.3
SUB1P53999 MRPL9-205ENST00000467306 1264 ntTSL 216.75■□□□□ 0.278e-6■■■□□ 15.3
SUB1P53999 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.69■□□□□ 0.268e-6■■■□□ 15.3
SUB1P53999 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.56■□□□□ 0.248e-6■■■□□ 15.3
SUB1P53999 NDUFAF8-202ENST00000573090 741 ntTSL 316.37■□□□□ 0.218e-6■■■□□ 15.3
SUB1P53999 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.098e-6■■■□□ 15.3
SUB1P53999 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.038e-6■■■□□ 15.3
SUB1P53999 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.038e-6■■■□□ 15.3
SUB1P53999 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.018e-6■■■□□ 15.3
SUB1P53999 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.1■□□□□ 0.018e-6■■■□□ 15.3
SUB1P53999 PTBP1-219ENST00000621737 1125 ntTSL 514.69□□□□□ -0.068e-6■■■□□ 15.3
SUB1P53999 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.61□□□□□ -0.071e-10■■■□□ 15.3
SUB1P53999 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.088e-6■■■□□ 15.3
SUB1P53999 CTBP1-211ENST00000511907 900 ntTSL 314.37□□□□□ -0.118e-6■■■□□ 15.3
SUB1P53999 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.128e-6■■■□□ 15.3
SUB1P53999 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.22□□□□□ -0.138e-6■■■□□ 15.3
SUB1P53999 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.158e-6■■■□□ 15.3
SUB1P53999 PTBP1-208ENST00000585956 767 ntTSL 313.94□□□□□ -0.188e-6■■■□□ 15.3
SUB1P53999 MPC2-203ENST00000458574 645 ntTSL 513.87□□□□□ -0.198e-6■■■□□ 15.3
SUB1P53999 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.28e-6■■■□□ 15.3
SUB1P53999 CTBP1-205ENST00000504092 920 ntTSL 513.77□□□□□ -0.218e-6■■■□□ 15.3
SUB1P53999 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.228e-6■■■□□ 15.3
SUB1P53999 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.248e-6■■■□□ 15.3
SUB1P53999 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.258e-6■■■□□ 15.3
SUB1P53999 CTBP1-207ENST00000505826 657 ntTSL 513.28□□□□□ -0.288e-6■■■□□ 15.3
SUB1P53999 CTBP1-216ENST00000514669 809 ntTSL 313.28□□□□□ -0.288e-6■■■□□ 15.3
SUB1P53999 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.328e-6■■■□□ 15.3
SUB1P53999 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.348e-6■■■□□ 15.3
SUB1P53999 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.358e-6■■■□□ 15.3
SUB1P53999 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.398e-6■■■□□ 15.3
SUB1P53999 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.398e-6■■■□□ 15.3
SUB1P53999 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.398e-6■■■□□ 15.3
SUB1P53999 MRPL51-204ENST00000540949 343 ntTSL 212.56□□□□□ -0.48e-6■■■□□ 15.3
SUB1P53999 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.428e-6■■■□□ 15.3
SUB1P53999 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.43□□□□□ -0.428e-6■■■□□ 15.3
SUB1P53999 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.33□□□□□ -0.441e-10■■■□□ 15.3
SUB1P53999 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.33□□□□□ -0.441e-10■■■□□ 15.3
SUB1P53999 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.458e-6■■■□□ 15.3
SUB1P53999 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.478e-6■■■□□ 15.3
SUB1P53999 OBSCN-203ENST00000366706 2983 ntTSL 512.08□□□□□ -0.488e-6■■■□□ 15.3
SUB1P53999 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.06□□□□□ -0.488e-6■■■□□ 15.3
SUB1P53999 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.488e-6■■■□□ 15.3
SUB1P53999 CTBP1-210ENST00000510739 774 ntTSL 311.78□□□□□ -0.528e-6■■■□□ 15.3
SUB1P53999 OBSCN-207ENST00000483539 4779 ntTSL 511.77□□□□□ -0.538e-6■■■□□ 15.3
SUB1P53999 OBSCN-202ENST00000366704 2534 ntTSL 211.64□□□□□ -0.558e-6■■■□□ 15.3
SUB1P53999 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.558e-6■■■□□ 15.3
SUB1P53999 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.558e-6■■■□□ 15.3
SUB1P53999 NDUFAF8-205ENST00000576002 365 ntTSL 211.38□□□□□ -0.598e-6■■■□□ 15.3
SUB1P53999 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.598e-6■■■□□ 15.3
SUB1P53999 AC012254.2-201ENST00000602459 1443 ntAPPRIS ALT2 TSL 511.25□□□□□ -0.618e-6■■■□□ 15.3
SUB1P53999 CTSL-206ENST00000495822 988 ntTSL 1 (best)11.01□□□□□ -0.658e-6■■■□□ 15.3
SUB1P53999 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.678e-6■■■□□ 15.3
SUB1P53999 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC10.85□□□□□ -0.678e-6■■■□□ 15.3
SUB1P53999 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.688e-6■■■□□ 15.3
SUB1P53999 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.698e-6■■■□□ 15.3
SUB1P53999 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.758e-6■■■□□ 15.3
SUB1P53999 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC10.35□□□□□ -0.758e-6■■■□□ 15.3
SUB1P53999 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC10.34□□□□□ -0.758e-6■■■□□ 15.3
SUB1P53999 PCCB-214ENST00000478469 4502 ntTSL 1 (best) BASIC10.31□□□□□ -0.768e-6■■■□□ 15.3
SUB1P53999 LONP2-208ENST00000566755 2514 ntTSL 510.22□□□□□ -0.778e-6■■■□□ 15.3
SUB1P53999 GRB10-202ENST00000357271 2050 ntTSL 1 (best) BASIC10.2□□□□□ -0.788e-6■■■□□ 15.3
SUB1P53999 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.798e-6■■■□□ 15.3
SUB1P53999 LONP2-203ENST00000535754 2580 ntTSL 1 (best) BASIC10.07□□□□□ -0.88e-6■■■□□ 15.3
SUB1P53999 APTX-201ENST00000309615 1859 ntTSL 1 (best) BASIC9.96□□□□□ -0.818e-6■■■□□ 15.3
SUB1P53999 METTL17-216ENST00000555533 1605 ntTSL 1 (best)9.87□□□□□ -0.838e-6■■■□□ 15.3
SUB1P53999 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.848e-6■■■□□ 15.3
SUB1P53999 LONP2-201ENST00000285737 8199 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.848e-6■■■□□ 15.3
SUB1P53999 SMARCE1-202ENST00000348513 5840 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.848e-6■■■□□ 15.3
SUB1P53999 DIS3-205ENST00000545453 3651 ntTSL 1 (best) BASIC9.77□□□□□ -0.858e-6■■■□□ 15.3
SUB1P53999 NDUFAF8-203ENST00000573173 709 ntTSL 29.74□□□□□ -0.858e-6■■■□□ 15.3
SUB1P53999 HCFC1-203ENST00000444191 3624 ntTSL 59.57□□□□□ -0.888e-6■■■□□ 15.3
SUB1P53999 IER3IP1-201ENST00000256433 3689 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.918e-6■■■□□ 15.3
SUB1P53999 APTX-206ENST00000379825 2023 ntTSL 2 BASIC9.36□□□□□ -0.918e-6■■■□□ 15.3
SUB1P53999 METTL17-217ENST00000555640 2887 ntTSL 59.28□□□□□ -0.928e-6■■■□□ 15.3
SUB1P53999 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC9.28□□□□□ -0.928e-6■■■□□ 15.3
SUB1P53999 GRB10-210ENST00000407526 2279 ntTSL 1 (best) BASIC9.26□□□□□ -0.938e-6■■■□□ 15.3
SUB1P53999 TM9SF2-201ENST00000376387 3430 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.958e-6■■■□□ 15.3
SUB1P53999 METTL17-222ENST00000556733 510 ntTSL 59.11□□□□□ -0.958e-6■■■□□ 15.3
SUB1P53999 APTX-213ENST00000465003 1991 ntTSL 1 (best)9.08□□□□□ -0.968e-6■■■□□ 15.3
SUB1P53999 APTX-227ENST00000485479 1986 ntTSL 1 (best)9.08□□□□□ -0.968e-6■■■□□ 15.3
SUB1P53999 NUDCD2-201ENST00000302764 8005 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.961e-10■■■□□ 15.3
SUB1P53999 APTX-208ENST00000436040 2168 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.978e-6■■■□□ 15.3
SUB1P53999 PTBP1-213ENST00000587191 357 ntTSL 58.96□□□□□ -0.988e-6■■■□□ 15.3
SUB1P53999 METTL17-224ENST00000557550 1529 ntTSL 58.88□□□□□ -0.998e-6■■■□□ 15.3
SUB1P53999 APTX-223ENST00000479656 1881 ntTSL 1 (best)8.87□□□□□ -0.998e-6■■■□□ 15.3
SUB1P53999 SMARCC2-209ENST00000550164 4114 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.018e-6■■■□□ 15.3
SUB1P53999 PTBP1-205ENST00000585535 314 ntTSL 38.56□□□□□ -1.048e-6■■■□□ 15.3
SUB1P53999 APTX-209ENST00000460940 1874 ntTSL 1 (best)8.52□□□□□ -1.058e-6■■■□□ 15.3
SUB1P53999 APTX-230ENST00000494649 2099 ntTSL 1 (best)8.51□□□□□ -1.058e-6■■■□□ 15.3
SUB1P53999 APTX-204ENST00000379817 2106 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.078e-6■■■□□ 15.3
SUB1P53999 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.088e-6■■■□□ 15.3
SUB1P53999 SMARCE1-214ENST00000578112 2384 ntTSL 58.2□□□□□ -1.18e-6■■■□□ 15.3
SUB1P53999 GRB10-203ENST00000398810 4785 ntTSL 1 (best) BASIC8.18□□□□□ -1.18e-6■■■□□ 15.3
SUB1P53999 APTX-225ENST00000482687 1879 ntTSL 1 (best)8.15□□□□□ -1.18e-6■■■□□ 15.3
SUB1P53999 APTX-205ENST00000379819 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.138e-6■■■□□ 15.3
SUB1P53999 APTX-207ENST00000397172 1740 ntTSL 1 (best) BASIC8□□□□□ -1.138e-6■■■□□ 15.3
SUB1P53999 APTX-216ENST00000472896 1759 ntTSL 1 (best)7.99□□□□□ -1.138e-6■■■□□ 15.3
SUB1P53999 APTX-226ENST00000483148 1764 ntTSL 1 (best)7.99□□□□□ -1.138e-6■■■□□ 15.3
SUB1P53999 APTX-214ENST00000467331 2101 ntTSL 1 (best)7.87□□□□□ -1.158e-6■■■□□ 15.3
SUB1P53999 SMARCC2-214ENST00000552674 3730 ntTSL 27.86□□□□□ -1.158e-6■■■□□ 15.3
Retrieved 100 of 11,644 protein–RNA pairs in 55.8 ms