RNA–Protein interactions for RNA: ENST00000485479.5

APTX-227, Transcript of aprataxin, humanhuman

TSL 1 (best)

Gene APTX, Length 1,986 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-227ENST00000485479 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
APTX-227ENST00000485479 CCDC180Q9P1Z9 1646 aa25.16■■□□□ 1.62
APTX-227ENST00000485479 ABCC9O60706 1549 aa24.62■■□□□ 1.53
APTX-227ENST00000485479 DCAF8L2P0C7V8 631 aa23.91■■□□□ 1.42
APTX-227ENST00000485479 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
APTX-227ENST00000485479 RB1CC1Q8TDY2 1594 aa23.61■■□□□ 1.37
APTX-227ENST00000485479 NACADO15069 1562 aa23.6■■□□□ 1.37
APTX-227ENST00000485479 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.34
APTX-227ENST00000485479 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
APTX-227ENST00000485479 UNC13AQ9UPW8 1703 aa23.21■■□□□ 1.31
APTX-227ENST00000485479 SCRIBQ14160 1630 aa23.17■■□□□ 1.3
APTX-227ENST00000485479 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
APTX-227ENST00000485479 BICRAQ9NZM4 1560 aa22.97■■□□□ 1.27
APTX-227ENST00000485479 SHROOM4Q9ULL8 1493 aa22.87■■□□□ 1.25
APTX-227ENST00000485479 DNAJC5BQ9UF47 199 aa22.44■■□□□ 1.18
APTX-227ENST00000485479 EIF4G1Q04637 1599 aaKnown RBP22.34■■□□□ 1.17
APTX-227ENST00000485479 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
APTX-227ENST00000485479 CC2D2AQ9P2K1 1620 aa22.23■■□□□ 1.15
APTX-227ENST00000485479 SMARCA4P51532 1647 aa22.08■■□□□ 1.13
APTX-227ENST00000485479 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
APTX-227ENST00000485479 MROH2BQ7Z745 1585 aa22.03■■□□□ 1.12
APTX-227ENST00000485479 ATAD2BQ9ULI0 1458 aa21.9■■□□□ 1.1
APTX-227ENST00000485479 WIZO95785 1651 aa21.84■■□□□ 1.09
APTX-227ENST00000485479 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
APTX-227ENST00000485479 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
APTX-227ENST00000485479 NCAPD3P42695 1498 aa21.79■■□□□ 1.08
APTX-227ENST00000485479 PEG3Q9GZU2 1588 aa21.77■■□□□ 1.08
APTX-227ENST00000485479 BAZ1BQ9UIG0 1483 aaKnown RBP21.75■■□□□ 1.07
APTX-227ENST00000485479 HMGXB3Q12766 1538 aa21.7■■□□□ 1.06
APTX-227ENST00000485479 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
APTX-227ENST00000485479 TOP2AP11388 1531 aaKnown RBP21.51■■□□□ 1.03
APTX-227ENST00000485479 NESP48681 1621 aa21.39■■□□□ 1.01
APTX-227ENST00000485479 CCDC88BA6NC98 1476 aa21.31■■□□□ 1
APTX-227ENST00000485479 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.98
APTX-227ENST00000485479 LAMC3Q9Y6N6 1575 aa21.19■□□□□ 0.98
APTX-227ENST00000485479 ERCC6Q03468 1493 aa21.15■□□□□ 0.98
APTX-227ENST00000485479 CFTRP13569 1480 aa21.12■□□□□ 0.97
APTX-227ENST00000485479 KIF21AQ7Z4S6 1674 aa21.11■□□□□ 0.97
APTX-227ENST00000485479 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
APTX-227ENST00000485479 FANCD2Q9BXW9 1451 aa21■□□□□ 0.95
APTX-227ENST00000485479 PRDM2Q13029 1718 aa20.98■□□□□ 0.95
APTX-227ENST00000485479 CEP164Q9UPV0 1460 aa20.94■□□□□ 0.94
APTX-227ENST00000485479 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
APTX-227ENST00000485479 MRC2Q9UBG0 1479 aa20.85■□□□□ 0.93
APTX-227ENST00000485479 URB2Q14146 1524 aaKnown RBP20.81■□□□□ 0.92
APTX-227ENST00000485479 WDR62O43379 1518 aa20.77■□□□□ 0.92
APTX-227ENST00000485479 CUX2O14529 1486 aa20.73■□□□□ 0.91
APTX-227ENST00000485479 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
APTX-227ENST00000485479 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
APTX-227ENST00000485479 DNMBPQ6XZF7 1577 aa20.65■□□□□ 0.9
APTX-227ENST00000485479 CUX1P39880 1505 aa20.65■□□□□ 0.9
APTX-227ENST00000485479 SYNJ1O43426 1573 aa20.56■□□□□ 0.88
APTX-227ENST00000485479 WRNQ14191 1432 aaPredicted RBP eCLIP20.56■□□□□ 0.88
APTX-227ENST00000485479 POLA1P09884 1462 aaPredicted RBP20.55■□□□□ 0.88
APTX-227ENST00000485479 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
APTX-227ENST00000485479 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
APTX-227ENST00000485479 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
APTX-227ENST00000485479 TOP2BQ02880 1626 aa20.47■□□□□ 0.87
APTX-227ENST00000485479 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
APTX-227ENST00000485479 IFT140Q96RY7 1462 aa20.45■□□□□ 0.86
APTX-227ENST00000485479 TARBP1Q13395 1621 aaKnown RBP20.44■□□□□ 0.86
APTX-227ENST00000485479 SOGA1O94964 1423 aa20.44■□□□□ 0.86
APTX-227ENST00000485479 TDRD9Q8NDG6 1382 aaKnown RBP20.38■□□□□ 0.85
APTX-227ENST00000485479 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.85
APTX-227ENST00000485479 EIF4G3O43432 1585 aaKnown RBP20.37■□□□□ 0.85
APTX-227ENST00000485479 WDR97A6NE52 1622 aa20.33■□□□□ 0.85
APTX-227ENST00000485479 ABCA10Q8WWZ4 1543 aa20.28■□□□□ 0.84
APTX-227ENST00000485479 TRIM41Q8WV44 630 aa20.25■□□□□ 0.83
APTX-227ENST00000485479 ABCA5Q8WWZ7 1642 aa20.22■□□□□ 0.83
APTX-227ENST00000485479 GAPVD1Q14C86 1478 aa20.21■□□□□ 0.83
APTX-227ENST00000485479 PBRM1Q86U86 1689 aa20.19■□□□□ 0.82
APTX-227ENST00000485479 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
APTX-227ENST00000485479 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
APTX-227ENST00000485479 AEBP2Q6ZN18 517 aaPredicted RBP20.15■□□□□ 0.82
APTX-227ENST00000485479 GRIN2BQ13224 1484 aa20.14■□□□□ 0.81
APTX-227ENST00000485479 FBLN2P98095 1184 aa20.14■□□□□ 0.81
APTX-227ENST00000485479 RUSC2Q8N2Y8 1516 aa20.12■□□□□ 0.81
APTX-227ENST00000485479 CHD1O14646 1710 aa20.09■□□□□ 0.81
APTX-227ENST00000485479 KIF27Q86VH2 1401 aa20.07■□□□□ 0.8
APTX-227ENST00000485479 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
APTX-227ENST00000485479 CHMP7Q8WUX9 453 aaPredicted RBP20.02■□□□□ 0.8
APTX-227ENST00000485479 ERICH3Q5RHP9 1530 aa20.02■□□□□ 0.8
APTX-227ENST00000485479 ADAMTS12P58397 1594 aa20.02■□□□□ 0.79
APTX-227ENST00000485479 SYNJ2O15056 1496 aa19.99■□□□□ 0.79
APTX-227ENST00000485479 IGF1RP08069 1367 aa19.99■□□□□ 0.79
APTX-227ENST00000485479 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
APTX-227ENST00000485479 OSCARQ8IYS5 282 aa19.97■□□□□ 0.79
APTX-227ENST00000485479 FHAD1B1AJZ9 1412 aa19.94■□□□□ 0.78
APTX-227ENST00000485479 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
APTX-227ENST00000485479 DNAJC5Q9H3Z4 198 aa19.91■□□□□ 0.78
APTX-227ENST00000485479 CUL7Q14999 1698 aa19.89■□□□□ 0.77
APTX-227ENST00000485479 CARMIL1Q5VZK9 1371 aa19.88■□□□□ 0.77
APTX-227ENST00000485479 CEP170Q5SW79 1584 aa19.86■□□□□ 0.77
APTX-227ENST00000485479 EHMT2Q96KQ7 1210 aa19.83■□□□□ 0.77
APTX-227ENST00000485479 CLASP1Q7Z460 1538 aa19.8■□□□□ 0.76
APTX-227ENST00000485479 CSRNP3Q8WYN3 585 aa19.79■□□□□ 0.76
APTX-227ENST00000485479 NUP160Q12769 1436 aa19.78■□□□□ 0.76
APTX-227ENST00000485479 RAPGEF2Q9Y4G8 1499 aa19.77■□□□□ 0.76
APTX-227ENST00000485479 PRXQ9BXM0 1461 aa19.75■□□□□ 0.75
APTX-227ENST00000485479 EEA1Q15075 1411 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms