RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, humanhuman

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-209ENST00000460940 NISCHQ9Y2I1 1504 aa26.68■■□□□ 1.86
APTX-209ENST00000460940 CCDC180Q9P1Z9 1646 aa23.7■■□□□ 1.38
APTX-209ENST00000460940 ABCC9O60706 1549 aa22.97■■□□□ 1.27
APTX-209ENST00000460940 ZCCHC6Q5VYS8 1495 aaKnown RBP22.27■■□□□ 1.16
APTX-209ENST00000460940 NACADO15069 1562 aa22.24■■□□□ 1.15
APTX-209ENST00000460940 RB1CC1Q8TDY2 1594 aa22.22■■□□□ 1.15
APTX-209ENST00000460940 MYO15BQ96JP2 1530 aa22.19■■□□□ 1.14
APTX-209ENST00000460940 DCAF1Q9Y4B6 1507 aa22.13■■□□□ 1.13
APTX-209ENST00000460940 DCAF8L2P0C7V8 631 aa22.11■■□□□ 1.13
APTX-209ENST00000460940 UNC13AQ9UPW8 1703 aa21.65■■□□□ 1.06
APTX-209ENST00000460940 SCRIBQ14160 1630 aa21.57■■□□□ 1.04
APTX-209ENST00000460940 BICRAQ9NZM4 1560 aa21.51■■□□□ 1.03
APTX-209ENST00000460940 PABPN1Q86U42 306 aaKnown RBP eCLIP21.45■■□□□ 1.02
APTX-209ENST00000460940 SHROOM4Q9ULL8 1493 aa21.41■■□□□ 1.02
APTX-209ENST00000460940 EIF4G1Q04637 1599 aaKnown RBP20.95■□□□□ 0.94
APTX-209ENST00000460940 DNAJC5BQ9UF47 199 aa20.9■□□□□ 0.94
APTX-209ENST00000460940 CC2D2AQ9P2K1 1620 aa20.8■□□□□ 0.92
APTX-209ENST00000460940 CECR2Q9BXF3 1484 aa20.71■□□□□ 0.91
APTX-209ENST00000460940 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
APTX-209ENST00000460940 SMARCA4P51532 1647 aa20.67■□□□□ 0.9
APTX-209ENST00000460940 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
APTX-209ENST00000460940 MROH2BQ7Z745 1585 aa20.53■□□□□ 0.88
APTX-209ENST00000460940 ATAD2BQ9ULI0 1458 aa20.52■□□□□ 0.88
APTX-209ENST00000460940 PEG3Q9GZU2 1588 aa20.51■□□□□ 0.87
APTX-209ENST00000460940 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
APTX-209ENST00000460940 HMGXB3Q12766 1538 aa20.44■□□□□ 0.86
APTX-209ENST00000460940 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
APTX-209ENST00000460940 RSF1Q96T23 1441 aaPredicted RBP20.35■□□□□ 0.85
APTX-209ENST00000460940 WIZO95785 1651 aa20.3■□□□□ 0.84
APTX-209ENST00000460940 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
APTX-209ENST00000460940 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
APTX-209ENST00000460940 NESP48681 1621 aa19.91■□□□□ 0.78
APTX-209ENST00000460940 CADPSQ9ULU8 1353 aa19.9■□□□□ 0.78
APTX-209ENST00000460940 CCDC88BA6NC98 1476 aa19.87■□□□□ 0.77
APTX-209ENST00000460940 SUPT5HO00267 1087 aaKnown RBP19.86■□□□□ 0.77
APTX-209ENST00000460940 CFTRP13569 1480 aa19.83■□□□□ 0.76
APTX-209ENST00000460940 ERCC6Q03468 1493 aa19.83■□□□□ 0.76
APTX-209ENST00000460940 PDS5BQ9NTI5 1447 aa19.81■□□□□ 0.76
APTX-209ENST00000460940 KIF21AQ7Z4S6 1674 aa19.7■□□□□ 0.74
APTX-209ENST00000460940 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
APTX-209ENST00000460940 FANCD2Q9BXW9 1451 aa19.67■□□□□ 0.74
APTX-209ENST00000460940 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
APTX-209ENST00000460940 THOC2Q8NI27 1593 aaKnown RBP19.64■□□□□ 0.73
APTX-209ENST00000460940 CUX2O14529 1486 aa19.61■□□□□ 0.73
APTX-209ENST00000460940 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
APTX-209ENST00000460940 WDR62O43379 1518 aa19.54■□□□□ 0.72
APTX-209ENST00000460940 URB2Q14146 1524 aaKnown RBP19.45■□□□□ 0.7
APTX-209ENST00000460940 ABCC8Q09428 1581 aa19.42■□□□□ 0.7
APTX-209ENST00000460940 DNMBPQ6XZF7 1577 aa19.38■□□□□ 0.69
APTX-209ENST00000460940 TOPBP1Q92547 1522 aa19.37■□□□□ 0.69
APTX-209ENST00000460940 CUX1P39880 1505 aa19.26■□□□□ 0.67
APTX-209ENST00000460940 IFT140Q96RY7 1462 aa19.24■□□□□ 0.67
APTX-209ENST00000460940 POLA1P09884 1462 aaPredicted RBP19.22■□□□□ 0.67
APTX-209ENST00000460940 WRNQ14191 1432 aaPredicted RBP eCLIP19.2■□□□□ 0.66
APTX-209ENST00000460940 FGD5Q6ZNL6 1462 aa19.19■□□□□ 0.66
APTX-209ENST00000460940 TOP2BQ02880 1626 aa19.16■□□□□ 0.66
APTX-209ENST00000460940 BIVM-ERCC5R4GMW8 1640 aa19.15■□□□□ 0.66
APTX-209ENST00000460940 TARBP1Q13395 1621 aaKnown RBP19.15■□□□□ 0.66
APTX-209ENST00000460940 SYNJ1O43426 1573 aa19.13■□□□□ 0.65
APTX-209ENST00000460940 SOGA1O94964 1423 aa19.12■□□□□ 0.65
APTX-209ENST00000460940 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
APTX-209ENST00000460940 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
APTX-209ENST00000460940 WDR97A6NE52 1622 aa19.08■□□□□ 0.64
APTX-209ENST00000460940 EIF4G3O43432 1585 aaKnown RBP19.06■□□□□ 0.64
APTX-209ENST00000460940 ABCA10Q8WWZ4 1543 aa19.03■□□□□ 0.64
APTX-209ENST00000460940 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.63
APTX-209ENST00000460940 TDRD9Q8NDG6 1382 aaKnown RBP18.97■□□□□ 0.63
APTX-209ENST00000460940 ABCA5Q8WWZ7 1642 aa18.94■□□□□ 0.62
APTX-209ENST00000460940 GRIN2BQ13224 1484 aa18.92■□□□□ 0.62
APTX-209ENST00000460940 GAPVD1Q14C86 1478 aa18.92■□□□□ 0.62
APTX-209ENST00000460940 MAGI1Q96QZ7 1491 aaPredicted RBP18.87■□□□□ 0.61
APTX-209ENST00000460940 PBRM1Q86U86 1689 aa18.87■□□□□ 0.61
APTX-209ENST00000460940 SNAPC4Q5SXM2 1469 aa18.85■□□□□ 0.61
APTX-209ENST00000460940 ERICH3Q5RHP9 1530 aa18.82■□□□□ 0.6
APTX-209ENST00000460940 KIF27Q86VH2 1401 aa18.81■□□□□ 0.6
APTX-209ENST00000460940 TRIM41Q8WV44 630 aa18.8■□□□□ 0.6
APTX-209ENST00000460940 SYNJ2O15056 1496 aa18.78■□□□□ 0.6
APTX-209ENST00000460940 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
APTX-209ENST00000460940 CHD1O14646 1710 aa18.76■□□□□ 0.59
APTX-209ENST00000460940 ADAMTS12P58397 1594 aa18.75■□□□□ 0.59
APTX-209ENST00000460940 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
APTX-209ENST00000460940 FHAD1B1AJZ9 1412 aa18.72■□□□□ 0.59
APTX-209ENST00000460940 CHMP7Q8WUX9 453 aaPredicted RBP18.71■□□□□ 0.59
APTX-209ENST00000460940 FBLN2P98095 1184 aa18.71■□□□□ 0.59
APTX-209ENST00000460940 IGF1RP08069 1367 aa18.68■□□□□ 0.58
APTX-209ENST00000460940 CUL7Q14999 1698 aa18.67■□□□□ 0.58
APTX-209ENST00000460940 GRIN2AQ12879 1464 aa18.67■□□□□ 0.58
APTX-209ENST00000460940 CHIC1Q5VXU3 224 aa18.64■□□□□ 0.57
APTX-209ENST00000460940 CLASP1Q7Z460 1538 aa18.6■□□□□ 0.57
APTX-209ENST00000460940 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
APTX-209ENST00000460940 NUP160Q12769 1436 aa18.59■□□□□ 0.57
APTX-209ENST00000460940 CARMIL1Q5VZK9 1371 aa18.57■□□□□ 0.56
APTX-209ENST00000460940 EEA1Q15075 1411 aa18.57■□□□□ 0.56
APTX-209ENST00000460940 CEP170Q5SW79 1584 aa18.55■□□□□ 0.56
APTX-209ENST00000460940 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
APTX-209ENST00000460940 ARHGEF11O15085 1522 aa18.48■□□□□ 0.55
APTX-209ENST00000460940 PRXQ9BXM0 1461 aa18.47■□□□□ 0.55
APTX-209ENST00000460940 RIMBP3CA6NJZ7 1639 aa18.44■□□□□ 0.54
APTX-209ENST00000460940 RIMBP3BA6NNM3 1639 aa18.44■□□□□ 0.54
APTX-209ENST00000460940 RIMBP3Q9UFD9 1639 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms