RNA–Protein interactions for RNA: ENST00000494649.5

APTX-230, Transcript of aprataxin, humanhuman

TSL 1 (best)

Gene APTX, Length 2,099 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-230ENST00000494649 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.85
APTX-230ENST00000494649 CCDC180Q9P1Z9 1646 aa23.52■■□□□ 1.36
APTX-230ENST00000494649 ABCC9O60706 1549 aa23.1■■□□□ 1.29
APTX-230ENST00000494649 DCAF8L2P0C7V8 631 aa22.45■■□□□ 1.18
APTX-230ENST00000494649 ZCCHC6Q5VYS8 1495 aaKnown RBP22.21■■□□□ 1.15
APTX-230ENST00000494649 RB1CC1Q8TDY2 1594 aa22.13■■□□□ 1.13
APTX-230ENST00000494649 NACADO15069 1562 aa22.1■■□□□ 1.13
APTX-230ENST00000494649 MYO15BQ96JP2 1530 aa21.93■■□□□ 1.1
APTX-230ENST00000494649 DCAF1Q9Y4B6 1507 aa21.92■■□□□ 1.1
APTX-230ENST00000494649 UNC13AQ9UPW8 1703 aa21.68■■□□□ 1.06
APTX-230ENST00000494649 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
APTX-230ENST00000494649 SCRIBQ14160 1630 aa21.67■■□□□ 1.06
APTX-230ENST00000494649 BICRAQ9NZM4 1560 aa21.49■■□□□ 1.03
APTX-230ENST00000494649 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.01
APTX-230ENST00000494649 DNAJC5BQ9UF47 199 aa21.14■□□□□ 0.97
APTX-230ENST00000494649 EIF4G1Q04637 1599 aaKnown RBP20.93■□□□□ 0.94
APTX-230ENST00000494649 CECR2Q9BXF3 1484 aa20.84■□□□□ 0.93
APTX-230ENST00000494649 CC2D2AQ9P2K1 1620 aa20.83■□□□□ 0.92
APTX-230ENST00000494649 SMARCA4P51532 1647 aa20.65■□□□□ 0.9
APTX-230ENST00000494649 BAZ1AQ9NRL2 1556 aaPredicted RBP20.62■□□□□ 0.89
APTX-230ENST00000494649 MROH2BQ7Z745 1585 aa20.6■□□□□ 0.89
APTX-230ENST00000494649 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
APTX-230ENST00000494649 SMARCA2P51531 1590 aa20.43■□□□□ 0.86
APTX-230ENST00000494649 NCAPD3P42695 1498 aa20.42■□□□□ 0.86
APTX-230ENST00000494649 WIZO95785 1651 aa20.4■□□□□ 0.86
APTX-230ENST00000494649 RSF1Q96T23 1441 aaPredicted RBP20.4■□□□□ 0.86
APTX-230ENST00000494649 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
APTX-230ENST00000494649 PEG3Q9GZU2 1588 aa20.35■□□□□ 0.85
APTX-230ENST00000494649 HMGXB3Q12766 1538 aa20.31■□□□□ 0.84
APTX-230ENST00000494649 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
APTX-230ENST00000494649 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
APTX-230ENST00000494649 NESP48681 1621 aa20.04■□□□□ 0.8
APTX-230ENST00000494649 CCDC88BA6NC98 1476 aa19.93■□□□□ 0.78
APTX-230ENST00000494649 CADPSQ9ULU8 1353 aa19.88■□□□□ 0.77
APTX-230ENST00000494649 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
APTX-230ENST00000494649 LAMC3Q9Y6N6 1575 aa19.85■□□□□ 0.77
APTX-230ENST00000494649 CFTRP13569 1480 aa19.77■□□□□ 0.76
APTX-230ENST00000494649 KIF21AQ7Z4S6 1674 aa19.74■□□□□ 0.75
APTX-230ENST00000494649 PDS5BQ9NTI5 1447 aa19.74■□□□□ 0.75
APTX-230ENST00000494649 FANCD2Q9BXW9 1451 aa19.68■□□□□ 0.74
APTX-230ENST00000494649 CEP164Q9UPV0 1460 aa19.63■□□□□ 0.73
APTX-230ENST00000494649 THOC2Q8NI27 1593 aaKnown RBP19.59■□□□□ 0.73
APTX-230ENST00000494649 PRDM2Q13029 1718 aa19.58■□□□□ 0.72
APTX-230ENST00000494649 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
APTX-230ENST00000494649 URB2Q14146 1524 aaKnown RBP19.48■□□□□ 0.71
APTX-230ENST00000494649 CUX2O14529 1486 aa19.47■□□□□ 0.71
APTX-230ENST00000494649 WDR62O43379 1518 aa19.45■□□□□ 0.7
APTX-230ENST00000494649 TOPBP1Q92547 1522 aa19.37■□□□□ 0.69
APTX-230ENST00000494649 ABCC8Q09428 1581 aa19.33■□□□□ 0.68
APTX-230ENST00000494649 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
APTX-230ENST00000494649 DNAJC5Q9H3Z4 198 aa19.31■□□□□ 0.68
APTX-230ENST00000494649 CUX1P39880 1505 aa19.3■□□□□ 0.68
APTX-230ENST00000494649 POLA1P09884 1462 aaPredicted RBP19.23■□□□□ 0.67
APTX-230ENST00000494649 WRNQ14191 1432 aaPredicted RBP eCLIP19.23■□□□□ 0.67
APTX-230ENST00000494649 FGD5Q6ZNL6 1462 aa19.22■□□□□ 0.67
APTX-230ENST00000494649 RAD54L2Q9Y4B4 1467 aa19.21■□□□□ 0.67
APTX-230ENST00000494649 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
APTX-230ENST00000494649 ZNF608Q9ULD9 1512 aaPredicted RBP19.18■□□□□ 0.66
APTX-230ENST00000494649 IFT140Q96RY7 1462 aa19.17■□□□□ 0.66
APTX-230ENST00000494649 SOGA1O94964 1423 aa19.16■□□□□ 0.66
APTX-230ENST00000494649 TOP2BQ02880 1626 aa19.13■□□□□ 0.65
APTX-230ENST00000494649 TARBP1Q13395 1621 aaKnown RBP19.12■□□□□ 0.65
APTX-230ENST00000494649 BIVM-ERCC5R4GMW8 1640 aa19.1■□□□□ 0.65
APTX-230ENST00000494649 AQRO60306 1485 aaKnown RBP eCLIP19.1■□□□□ 0.65
APTX-230ENST00000494649 TDRD9Q8NDG6 1382 aaKnown RBP19.1■□□□□ 0.65
APTX-230ENST00000494649 EIF4G3O43432 1585 aaKnown RBP19.06■□□□□ 0.64
APTX-230ENST00000494649 WDR97A6NE52 1622 aa18.98■□□□□ 0.63
APTX-230ENST00000494649 ABCA10Q8WWZ4 1543 aa18.98■□□□□ 0.63
APTX-230ENST00000494649 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
APTX-230ENST00000494649 GAPVD1Q14C86 1478 aa18.93■□□□□ 0.62
APTX-230ENST00000494649 FBLN2P98095 1184 aa18.92■□□□□ 0.62
APTX-230ENST00000494649 ABCA5Q8WWZ7 1642 aa18.89■□□□□ 0.62
APTX-230ENST00000494649 SNAPC4Q5SXM2 1469 aa18.89■□□□□ 0.61
APTX-230ENST00000494649 GRIN2BQ13224 1484 aa18.88■□□□□ 0.61
APTX-230ENST00000494649 PBRM1Q86U86 1689 aa18.86■□□□□ 0.61
APTX-230ENST00000494649 CHIC1Q5VXU3 224 aa18.81■□□□□ 0.6
APTX-230ENST00000494649 CHMP7Q8WUX9 453 aaPredicted RBP18.8■□□□□ 0.6
APTX-230ENST00000494649 CHD1O14646 1710 aa18.79■□□□□ 0.6
APTX-230ENST00000494649 KIF27Q86VH2 1401 aa18.79■□□□□ 0.6
APTX-230ENST00000494649 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
APTX-230ENST00000494649 OSCARQ8IYS5 282 aa18.78■□□□□ 0.6
APTX-230ENST00000494649 MAGI1Q96QZ7 1491 aaPredicted RBP18.78■□□□□ 0.6
APTX-230ENST00000494649 SYNJ2O15056 1496 aa18.74■□□□□ 0.59
APTX-230ENST00000494649 ERICH3Q5RHP9 1530 aa18.73■□□□□ 0.59
APTX-230ENST00000494649 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
APTX-230ENST00000494649 IGF1RP08069 1367 aa18.72■□□□□ 0.59
APTX-230ENST00000494649 FAM9AQ8IZU1 332 aaPredicted RBP18.7■□□□□ 0.58
APTX-230ENST00000494649 FHAD1B1AJZ9 1412 aa18.68■□□□□ 0.58
APTX-230ENST00000494649 GRIN2AQ12879 1464 aa18.65■□□□□ 0.58
APTX-230ENST00000494649 CARMIL1Q5VZK9 1371 aa18.61■□□□□ 0.57
APTX-230ENST00000494649 CUL7Q14999 1698 aa18.59■□□□□ 0.57
APTX-230ENST00000494649 CEP170Q5SW79 1584 aa18.58■□□□□ 0.57
APTX-230ENST00000494649 EHMT2Q96KQ7 1210 aa18.56■□□□□ 0.56
APTX-230ENST00000494649 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
APTX-230ENST00000494649 CSRNP3Q8WYN3 585 aa18.53■□□□□ 0.56
APTX-230ENST00000494649 NUP160Q12769 1436 aa18.53■□□□□ 0.56
APTX-230ENST00000494649 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
APTX-230ENST00000494649 ARHGEF11O15085 1522 aa18.48■□□□□ 0.55
APTX-230ENST00000494649 RIMBP3CA6NJZ7 1639 aa18.46■□□□□ 0.55
APTX-230ENST00000494649 RIMBP3BA6NNM3 1639 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms