Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.18■□□□□ 0.66
SNX3O60493 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.18■□□□□ 0.66
SNX3O60493 PHGDH-210ENST00000641115 1638 ntBASIC19.18■□□□□ 0.66
SNX3O60493 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.18■□□□□ 0.66
SNX3O60493 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 MKRN4P-201ENST00000444706 1521 ntBASIC19.18■□□□□ 0.66
SNX3O60493 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.18■□□□□ 0.66
SNX3O60493 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SNX3O60493 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SNX3O60493 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.17■□□□□ 0.66
SNX3O60493 ABALON-201ENST00000629058 1903 ntBASIC19.17■□□□□ 0.66
SNX3O60493 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 KRT8P20-201ENST00000423953 1409 ntBASIC19.17■□□□□ 0.66
SNX3O60493 AC139713.2-201ENST00000641328 2723 ntBASIC19.17■□□□□ 0.66
SNX3O60493 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SNX3O60493 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.17■□□□□ 0.66
SNX3O60493 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.17■□□□□ 0.66
SNX3O60493 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 UNC93B3-201ENST00000308076 687 ntBASIC19.17■□□□□ 0.66
SNX3O60493 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SNX3O60493 AC131281.2-201ENST00000520478 145 ntBASIC19.17■□□□□ 0.66
SNX3O60493 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SNX3O60493 AC024257.2-201ENST00000549699 147 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L2-201ENST00000561772 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L6-201ENST00000626483 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L1-201ENST00000627662 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L8-201ENST00000629013 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L3-201ENST00000630187 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L7-201ENST00000630678 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 DUX4L5-201ENST00000630834 1275 ntBASIC19.17■□□□□ 0.66
SNX3O60493 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SNX3O60493 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.17■□□□□ 0.66
SNX3O60493 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SNX3O60493 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SNX3O60493 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.16■□□□□ 0.66
SNX3O60493 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.16■□□□□ 0.66
SNX3O60493 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.16■□□□□ 0.66
SNX3O60493 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.16■□□□□ 0.66
SNX3O60493 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.16■□□□□ 0.66
SNX3O60493 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.16■□□□□ 0.66
SNX3O60493 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.16■□□□□ 0.66
SNX3O60493 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 CDV3P1-201ENST00000471403 739 ntBASIC19.16■□□□□ 0.66
SNX3O60493 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.16■□□□□ 0.66
SNX3O60493 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SNX3O60493 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms