Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 AL121832.2-201ENST00000610979 668 ntBASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CPSF4LA6NMK7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 AC083906.2-201ENST00000511578 360 ntBASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 AC005829.2-201ENST00000571422 1056 ntBASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CPSF4LA6NMK7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 TFP1-202ENST00000475455 1573 ntBASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 AC006557.6-201ENST00000623071 864 ntBASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.93■□□□□ 0.46
CPSF4LA6NMK7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CPSF4LA6NMK7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms