Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 NECAB3-217ENST00000606106 591 ntTSL 417.51■□□□□ 0.394e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-215ENST00000494174 859 ntTSL 517.51■□□□□ 0.394e-6■■□□□ 12.4
SMNDC1O75940 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.13■□□□□ 0.175e-9■■□□□ 12.4
SMNDC1O75940 NECAB3-216ENST00000498353 597 ntTSL 315.8■□□□□ 0.124e-6■■□□□ 12.4
SMNDC1O75940 PLXNB2-202ENST00000411680 704 ntTSL 215.17■□□□□ 0.024e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-214ENST00000493590 625 ntTSL 515.15■□□□□ 0.024e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-208ENST00000480994 732 ntTSL 515.11■□□□□ 0.014e-6■■□□□ 12.4
SMNDC1O75940 PLXNB2-212ENST00000496720 913 ntTSL 314.96□□□□□ -0.014e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-204ENST00000463246 766 ntTSL 314.88□□□□□ -0.034e-6■■□□□ 12.4
SMNDC1O75940 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.085e-9■■□□□ 12.4
SMNDC1O75940 GRSF1-204ENST00000505068 3561 ntTSL 213.94□□□□□ -0.185e-9■■□□□ 12.4
SMNDC1O75940 NECAB3-203ENST00000439478 925 ntTSL 513.01□□□□□ -0.334e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-219ENST00000606690 900 ntTSL 513.01□□□□□ -0.334e-6■■□□□ 12.4
SMNDC1O75940 GRSF1-207ENST00000514161 1765 ntTSL 29.9□□□□□ -0.825e-9■■□□□ 12.4
SMNDC1O75940 GRSF1-206ENST00000508091 419 ntTSL 38.76□□□□□ -1.015e-9■■□□□ 12.4
SMNDC1O75940 GRSF1-203ENST00000502323 1794 ntTSL 5 BASIC8.48□□□□□ -1.055e-9■■□□□ 12.4
SMNDC1O75940 GRSF1-205ENST00000506453 925 ntTSL 37.81□□□□□ -1.165e-9■■□□□ 12.4
SMNDC1O75940 DDX17-206ENST00000467279 712 ntTSL 521.09■□□□□ 0.978e-12■■□□□ 12.4
SMNDC1O75940 DDX17-205ENST00000432525 1354 ntTSL 29.59□□□□□ -0.878e-12■■□□□ 12.4
SMNDC1O75940 FTCD-208ENST00000480950 318 ntTSL 322.56■■□□□ 1.26e-7■■□□□ 12.4
SMNDC1O75940 FTCD-207ENST00000469240 458 ntTSL 318.37■□□□□ 0.536e-7■■□□□ 12.4
SMNDC1O75940 GUK1-219ENST00000470040 2548 ntTSL 216.61■□□□□ 0.253e-7■■□□□ 12.4
SMNDC1O75940 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.043e-7■■□□□ 12.4
SMNDC1O75940 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.82■□□□□ 0.121e-323■■□□□ 12.4
SMNDC1O75940 DANCR-202ENST00000425653 823 ntTSL 1 (best)14.84□□□□□ -0.031e-323■■□□□ 12.4
SMNDC1O75940 SNORA26-201ENST00000391286 122 ntBASIC3.36□□□□□ -1.871e-323■■□□□ 12.4
SMNDC1O75940 TANGO2-225ENST00000490121 125 ntTSL 39.49□□□□□ -0.892e-7■■□□□ 12.3
SMNDC1O75940 ITPA-210ENST00000609835 924 ntTSL 1 (best)19.4■□□□□ 0.72e-7■■□□□ 12.3
SMNDC1O75940 MED15-229ENST00000489651 3563 ntTSL 1 (best)12.23□□□□□ -0.453e-6■■□□□ 12.3
SMNDC1O75940 MED15-226ENST00000478831 707 ntTSL 410.29□□□□□ -0.763e-6■■□□□ 12.3
SMNDC1O75940 AL024507.2-201ENST00000606070 2574 ntBASIC23.19■■□□□ 1.34e-6■■□□□ 12.3
SMNDC1O75940 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.984e-6■■□□□ 12.3
SMNDC1O75940 PRRC2B-205ENST00000451855 1762 ntTSL 520.33■□□□□ 0.844e-6■■□□□ 12.3
SMNDC1O75940 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.534e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.449e-9■■□□□ 12.3
SMNDC1O75940 TAF1C-208ENST00000563428 2531 ntTSL 217.15■□□□□ 0.349e-9■■□□□ 12.3
SMNDC1O75940 P4HB-207ENST00000472244 858 ntTSL 516.91■□□□□ 0.34e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-202ENST00000537450 1318 ntTSL 216.79■□□□□ 0.289e-9■■□□□ 12.3
SMNDC1O75940 ASPSCR1-220ENST00000585140 447 ntTSL 316.72■□□□□ 0.272e-12■■□□□ 12.3
SMNDC1O75940 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.254e-6■■□□□ 12.3
SMNDC1O75940 PER1-212ENST00000581395 3209 ntTSL 216.44■□□□□ 0.224e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-217ENST00000566903 2628 ntTSL 516.28■□□□□ 0.29e-9■■□□□ 12.3
SMNDC1O75940 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.199e-9■■□□□ 12.3
SMNDC1O75940 TAF1C-204ENST00000544090 2747 ntTSL 216.19■□□□□ 0.189e-9■■□□□ 12.3
SMNDC1O75940 TIMM44-205ENST00000597926 819 ntTSL 315.99■□□□□ 0.154e-6■■□□□ 12.3
SMNDC1O75940 ASPSCR1-214ENST00000582404 534 ntTSL 315.74■□□□□ 0.113e-7■■□□□ 12.3
SMNDC1O75940 GNB2-208ENST00000431068 910 ntTSL 515.67■□□□□ 0.14e-6■■□□□ 12.3
SMNDC1O75940 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.064e-6■■□□□ 12.3
SMNDC1O75940 TIMM44-203ENST00000595831 1797 ntTSL 515.04■□□□□ -04e-6■■□□□ 12.3
SMNDC1O75940 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC14.25□□□□□ -0.134e-6■■□□□ 12.3
SMNDC1O75940 PER1-202ENST00000354903 3115 ntTSL 2 BASIC14.11□□□□□ -0.154e-6■■□□□ 12.3
SMNDC1O75940 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.76□□□□□ -0.214e-6■■□□□ 12.3
SMNDC1O75940 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.214e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-212ENST00000564774 4637 ntTSL 213.71□□□□□ -0.219e-9■■□□□ 12.3
SMNDC1O75940 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.7□□□□□ -0.229e-9■■□□□ 12.3
SMNDC1O75940 GNB2-204ENST00000412215 545 ntTSL 413.67□□□□□ -0.224e-6■■□□□ 12.3
SMNDC1O75940 PER1-211ENST00000581082 4521 ntTSL 5 BASIC13.46□□□□□ -0.254e-6■■□□□ 12.3
SMNDC1O75940 IRF3-211ENST00000596644 550 ntTSL 213.41□□□□□ -0.264e-6■■□□□ 12.3
SMNDC1O75940 ASPSCR1-217ENST00000583693 3976 ntTSL 213.25□□□□□ -0.293e-7■■□□□ 12.3
SMNDC1O75940 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.324e-6■■□□□ 12.3
SMNDC1O75940 IRF3-224ENST00000599680 472 ntTSL 312.92□□□□□ -0.344e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-201ENST00000341690 3678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.49e-9■■□□□ 12.3
SMNDC1O75940 TIMM44-204ENST00000595876 1206 ntTSL 1 (best)12.5□□□□□ -0.414e-6■■□□□ 12.3
SMNDC1O75940 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.414e-6■■□□□ 12.3
SMNDC1O75940 TIMM44-207ENST00000598675 744 ntTSL 312.47□□□□□ -0.414e-6■■□□□ 12.3
SMNDC1O75940 PER1-214ENST00000582719 3677 ntTSL 512.46□□□□□ -0.424e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-223ENST00000570270 597 ntTSL 312.34□□□□□ -0.439e-9■■□□□ 12.3
SMNDC1O75940 TAF1C-218ENST00000567759 3879 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.449e-9■■□□□ 12.3
SMNDC1O75940 TAF1C-203ENST00000541676 3502 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.459e-9■■□□□ 12.3
SMNDC1O75940 PER1-207ENST00000578950 540 ntTSL 212.11□□□□□ -0.474e-6■■□□□ 12.3
SMNDC1O75940 RAB5B-211ENST00000628569 496 ntTSL 5 BASIC12.03□□□□□ -0.489e-9■■□□□ 12.3
SMNDC1O75940 TLN1-203ENST00000464379 814 ntTSL 312.01□□□□□ -0.499e-9■■□□□ 12.3
SMNDC1O75940 TLN1-204ENST00000465002 543 ntTSL 412□□□□□ -0.499e-9■■□□□ 12.3
SMNDC1O75940 POLDIP3-201ENST00000252115 3441 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.54e-6■■□□□ 12.3
SMNDC1O75940 POLDIP3-205ENST00000451060 3491 ntTSL 2 BASIC11.84□□□□□ -0.514e-6■■□□□ 12.3
SMNDC1O75940 TAF1C-209ENST00000564208 3810 ntTSL 211.79□□□□□ -0.529e-9■■□□□ 12.3
SMNDC1O75940 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.579e-9■■□□□ 12.3
SMNDC1O75940 GNB2-213ENST00000480159 899 ntTSL 511.24□□□□□ -0.614e-6■■□□□ 12.3
SMNDC1O75940 POLDIP3-203ENST00000348657 3323 ntTSL 1 (best) BASIC11.05□□□□□ -0.644e-6■■□□□ 12.3
SMNDC1O75940 PER1-205ENST00000578089 830 ntTSL 310.68□□□□□ -0.74e-6■■□□□ 12.3
SMNDC1O75940 ESYT1-207ENST00000550878 646 ntTSL 510.41□□□□□ -0.744e-11■■□□□ 12.3
SMNDC1O75940 RAB5B-208ENST00000550283 665 ntTSL 39.98□□□□□ -0.819e-9■■□□□ 12.3
SMNDC1O75940 RAB5B-206ENST00000549505 3148 ntTSL 1 (best)9.74□□□□□ -0.859e-9■■□□□ 12.3
SMNDC1O75940 POLDIP3-208ENST00000491021 1028 ntTSL 59.55□□□□□ -0.884e-6■■□□□ 12.3
SMNDC1O75940 POLDIP3-204ENST00000445215 3337 ntTSL 1 (best)9.47□□□□□ -0.894e-6■■□□□ 12.3
SMNDC1O75940 TLN1-205ENST00000466916 446 ntTSL 29.3□□□□□ -0.929e-9■■□□□ 12.3
SMNDC1O75940 PER1-215ENST00000583559 523 ntTSL 28.7□□□□□ -1.024e-6■■□□□ 12.3
SMNDC1O75940 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.159e-9■■□□□ 12.3
SMNDC1O75940 RHEB-203ENST00000470370 501 ntTSL 57.07□□□□□ -1.284e-6■■□□□ 12.3
SMNDC1O75940 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.319e-9■■□□□ 12.3
SMNDC1O75940 DHX9-205ENST00000479271 316 ntTSL 56.81□□□□□ -1.324e-11■■□□□ 12.3
SMNDC1O75940 RHEB-206ENST00000482053 557 ntTSL 36.74□□□□□ -1.334e-6■■□□□ 12.3
SMNDC1O75940 MIR6883-201ENST00000614952 78 ntBASIC6.5□□□□□ -1.374e-6■■□□□ 12.3
SMNDC1O75940 RHEB-202ENST00000470072 764 ntTSL 46.47□□□□□ -1.374e-6■■□□□ 12.3
SMNDC1O75940 ESYT1-209ENST00000551112 548 ntTSL 36.42□□□□□ -1.384e-11■■□□□ 12.3
SMNDC1O75940 P4HB-214ENST00000570907 353 ntTSL 35.72□□□□□ -1.494e-6■■□□□ 12.3
SMNDC1O75940 WRN-203ENST00000521620 3593 ntTSL 1 (best)3.85□□□□□ -1.794e-6■■□□□ 12.3
SMNDC1O75940 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.112e-9■■□□□ 12.2
SMNDC1O75940 RAB11FIP3-204ENST00000449879 580 ntTSL 314.99□□□□□ -0.012e-9■■□□□ 12.2
SMNDC1O75940 RAB11FIP3-206ENST00000452814 804 ntTSL 514.15□□□□□ -0.142e-9■■□□□ 12.2
Retrieved 100 of 11,362 protein–RNA pairs in 63.2 ms