Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 MIR663AHG-236ENST00000610014 475 ntTSL 522.84■■□□□ 1.251e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-205ENST00000594135 654 ntTSL 520.02■□□□□ 0.81e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-235ENST00000609914 644 ntTSL 520.02■□□□□ 0.81e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-217ENST00000598150 751 ntTSL 518.22■□□□□ 0.511e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-209ENST00000596111 505 ntTSL 517.93■□□□□ 0.461e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.3■□□□□ 0.21e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-221ENST00000600225 473 ntTSL 516.05■□□□□ 0.161e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-219ENST00000598451 511 ntTSL 515.52■□□□□ 0.081e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-215ENST00000597361 586 ntTSL 515.52■□□□□ 0.081e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-224ENST00000601119 750 ntTSL 514.84□□□□□ -0.031e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-226ENST00000601901 644 ntTSL 514.17□□□□□ -0.141e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-204ENST00000594130 628 ntTSL 513.83□□□□□ -0.21e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-234ENST00000609687 697 ntTSL 513.37□□□□□ -0.271e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-230ENST00000609012 708 ntTSL 5 BASIC11.91□□□□□ -0.51e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-208ENST00000596058 665 ntTSL 5 BASIC11.86□□□□□ -0.511e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-210ENST00000596223 691 ntTSL 58.5□□□□□ -1.051e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC8.23□□□□□ -1.091e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-202ENST00000432499 1129 ntTSL 54.73□□□□□ -1.651e-14■■■■■ 65.8
LIN28BQ6ZN17 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.29□□□□□ -1.881e-14■■■■■ 65.8
LIN28BQ6ZN17 BCAP29-213ENST00000482371 943 ntTSL 321.47■■□□□ 1.037e-10■■■■■ 65.8
LIN28BQ6ZN17 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.227e-10■■■■■ 65.8
LIN28BQ6ZN17 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.41■■□□□ 1.821e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.19■□□□□ 0.341e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.211e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.79□□□□□ -0.041e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-203ENST00000409171 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.221e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-206ENST00000456594 1065 ntTSL 54.42□□□□□ -1.71e-12■■■■■ 65.6
LIN28BQ6ZN17 AGFG1-208ENST00000486932 566 ntTSL 43.85□□□□□ -1.791e-12■■■■■ 65.6
LIN28BQ6ZN17 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.49■□□□□ 0.716e-7■■■■■ 65.5
LIN28BQ6ZN17 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.08□□□□□ -0.166e-7■■■■■ 65.5
LIN28BQ6ZN17 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.836e-7■■■■■ 65.5
LIN28BQ6ZN17 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC8.2□□□□□ -1.11e-17■■■■■ 65.3
LIN28BQ6ZN17 FRAS1-202ENST00000502446 2217 ntTSL 512.74□□□□□ -0.374e-8■■■■■ 65.2
LIN28BQ6ZN17 FRAS1-203ENST00000508900 2169 ntTSL 1 (best)11.71□□□□□ -0.544e-8■■■■■ 65.2
LIN28BQ6ZN17 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC9.27□□□□□ -0.924e-8■■■■■ 65.2
LIN28BQ6ZN17 SSR1-205ENST00000475213 446 ntTSL 313.93□□□□□ -0.186e-9■■■■■ 65.2
LIN28BQ6ZN17 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.516e-7■■■■■ 65.2
LIN28BQ6ZN17 SMCHD1-204ENST00000581226 459 ntTSL 34.55□□□□□ -1.683e-7■■■■■ 64.7
LIN28BQ6ZN17 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.85□□□□□ -1.633e-9■■■■■ 64.7
LIN28BQ6ZN17 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.174e-8■■■■■ 64.6
LIN28BQ6ZN17 ERGIC3-202ENST00000348547 1359 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.184e-8■■■■■ 64.6
LIN28BQ6ZN17 ERGIC3-205ENST00000413587 977 ntTSL 513.46□□□□□ -0.254e-8■■■■■ 64.6
LIN28BQ6ZN17 ERGIC3-220ENST00000640748 832 ntTSL 5 BASIC13.39□□□□□ -0.274e-8■■■■■ 64.6
LIN28BQ6ZN17 ERGIC3-206ENST00000416206 1235 ntTSL 513.14□□□□□ -0.314e-8■■■■■ 64.6
LIN28BQ6ZN17 AC067863.1-201ENST00000494933 530 ntBASIC18.59■□□□□ 0.573e-12■■■■■ 64.5
LIN28BQ6ZN17 CHRNB4-205ENST00000560511 727 ntTSL 39.64□□□□□ -0.873e-12■■■■■ 64.5
LIN28BQ6ZN17 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.265e-19■■■■■ 64.4
LIN28BQ6ZN17 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.365e-19■■■■■ 64.4
LIN28BQ6ZN17 CASC4-211ENST00000561305 353 ntTSL 53.94□□□□□ -1.785e-19■■■■■ 64.4
LIN28BQ6ZN17 KLHL20-201ENST00000209884 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.721e-23■■■■■ 64.3
LIN28BQ6ZN17 CLINT1-208ENST00000524306 2905 ntTSL 1 (best)5.31□□□□□ -1.564e-14■■■■■ 64.3
LIN28BQ6ZN17 CLINT1-202ENST00000518855 3394 ntTSL 24.66□□□□□ -1.664e-14■■■■■ 64.3
LIN28BQ6ZN17 LYPLA1-212ENST00000521898 344 ntTSL 512.88□□□□□ -0.352e-10■■■■■ 64.2
LIN28BQ6ZN17 RAN-204ENST00000464211 562 ntTSL 510.82□□□□□ -0.687e-11■■■■■ 64
LIN28BQ6ZN17 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.613e-13■■■■■ 63.9
LIN28BQ6ZN17 PRRC2A-206ENST00000464890 593 ntTSL 216.22■□□□□ 0.198e-13■■■■■ 63.9
LIN28BQ6ZN17 DLEU1-203ENST00000461527 917 ntTSL 1 (best) BASIC13.51□□□□□ -0.253e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-208ENST00000468168 982 ntTSL 1 (best) BASIC12.82□□□□□ -0.363e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-219ENST00000476738 838 ntTSL 5 BASIC12.64□□□□□ -0.393e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-232ENST00000491341 1141 ntTSL 5 BASIC12.51□□□□□ -0.413e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-207ENST00000467721 1455 ntTSL 5 BASIC11.9□□□□□ -0.53e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-209ENST00000468522 1158 ntTSL 5 BASIC11.69□□□□□ -0.543e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-201ENST00000378180 981 ntTSL 1 (best) BASIC11.6□□□□□ -0.553e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-229ENST00000486895 481 ntTSL 1 (best) BASIC11.6□□□□□ -0.553e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-231ENST00000490577 2440 ntTSL 5 BASIC11.27□□□□□ -0.613e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-206ENST00000463474 1048 ntTSL 1 (best) BASIC10.79□□□□□ -0.683e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-234ENST00000491615 1451 ntTSL 5 BASIC10.06□□□□□ -0.83e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1-212ENST00000469754 2955 ntTSL 1 (best) BASIC9.09□□□□□ -0.953e-37■■■■■ 63.8
LIN28BQ6ZN17 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.75□□□□□ -1.813e-37■■■■■ 63.8
LIN28BQ6ZN17 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20■□□□□ 0.793e-20■■■■■ 63.8
LIN28BQ6ZN17 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.293e-20■■■■■ 63.8
LIN28BQ6ZN17 SNAP23-220ENST00000568841 632 ntTSL 38.7□□□□□ -1.023e-20■■■■■ 63.8
LIN28BQ6ZN17 SNAP23-209ENST00000563873 368 ntTSL 36.41□□□□□ -1.383e-20■■■■■ 63.8
LIN28BQ6ZN17 SNAP23-208ENST00000563830 570 ntTSL 54.68□□□□□ -1.663e-20■■■■■ 63.8
LIN28BQ6ZN17 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC8.65□□□□□ -1.027e-18■■■■■ 63.6
LIN28BQ6ZN17 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC8.24□□□□□ -1.097e-18■■■■■ 63.6
LIN28BQ6ZN17 FUS-212ENST00000569760 639 ntTSL 226.76■■□□□ 1.875e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-209ENST00000566605 1787 ntTSL 1 (best)26.55■■□□□ 1.845e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.745e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.545e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-204ENST00000483853 778 ntTSL 224.35■■□□□ 1.495e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.065e-24■■■■■ 63.5
LIN28BQ6ZN17 FUS-206ENST00000487509 4920 ntTSL 213.14□□□□□ -0.315e-24■■■■■ 63.5
LIN28BQ6ZN17 YWHAB-207ENST00000631616 5867 ntTSL 1 (best)16■□□□□ 0.153e-16■■■■■ 63.3
LIN28BQ6ZN17 YWHAB-206ENST00000479421 1097 ntTSL 512.42□□□□□ -0.423e-16■■■■■ 63.3
LIN28BQ6ZN17 YWHAB-208ENST00000633979 689 ntTSL 39.15□□□□□ -0.943e-16■■■■■ 63.3
LIN28BQ6ZN17 YWHAB-205ENST00000477896 410 ntTSL 24.06□□□□□ -1.763e-16■■■■■ 63.3
LIN28BQ6ZN17 PRKD3-203ENST00000443187 695 ntTSL 412.67□□□□□ -0.381e-13■■■■■ 63.2
LIN28BQ6ZN17 PRKD3-206ENST00000464552 436 ntTSL 24.44□□□□□ -1.71e-13■■■■■ 63.2
LIN28BQ6ZN17 PRKD3-210ENST00000494667 4326 ntTSL 1 (best)3.92□□□□□ -1.781e-13■■■■■ 63.2
LIN28BQ6ZN17 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.861e-13■■■■■ 63.2
LIN28BQ6ZN17 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.991e-13■■■■■ 63.2
LIN28BQ6ZN17 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC13.74□□□□□ -0.211e-14■■■■■ 63
LIN28BQ6ZN17 ARHGAP25-203ENST00000409220 2939 ntTSL 1 (best) BASIC12.19□□□□□ -0.461e-14■■■■■ 63
LIN28BQ6ZN17 ARHGAP25-202ENST00000409202 2945 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.661e-14■■■■■ 63
LIN28BQ6ZN17 ARHGAP25-217ENST00000497259 2096 ntTSL 510.06□□□□□ -0.81e-14■■■■■ 63
LIN28BQ6ZN17 ARHGAP25-209ENST00000479844 1933 ntTSL 5 BASIC9.43□□□□□ -0.91e-14■■■■■ 63
LIN28BQ6ZN17 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.413e-13■■■■■ 62.9
LIN28BQ6ZN17 PTP4A3-205ENST00000523147 558 ntTSL 523.8■■□□□ 1.43e-13■■■■■ 62.9
LIN28BQ6ZN17 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.11■■□□□ 1.293e-13■■■■■ 62.9
Retrieved 100 of 21,972 protein–RNA pairs in 444.9 ms