RNA–Protein interactions for RNA: ENST00000494667.5

PRKD3-210, Transcript of protein kinase D3, humanhuman

TSL 1 (best)

Gene PRKD3, Length 4,326 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD3-210ENST00000494667 NISCHQ9Y2I1 1504 aa8.86□□□□□ -0.99
PRKD3-210ENST00000494667 PELP1Q8IZL8 1130 aaKnown RBP8.39□□□□□ -1.07
PRKD3-210ENST00000494667 HRCP23327 699 aa8.24□□□□□ -1.09
PRKD3-210ENST00000494667 MYT1Q01538 1121 aa8.2□□□□□ -1.1
PRKD3-210ENST00000494667 DCAF1Q9Y4B6 1507 aa7.97□□□□□ -1.13
PRKD3-210ENST00000494667 CCDC180Q9P1Z9 1646 aa7.94□□□□□ -1.14
PRKD3-210ENST00000494667 MYO15BQ96JP2 1530 aa7.92□□□□□ -1.14
PRKD3-210ENST00000494667 TTBK1Q5TCY1 1321 aaPredicted RBP7.86□□□□□ -1.15
PRKD3-210ENST00000494667 SCAF1Q9H7N4 1312 aaKnown RBP7.8□□□□□ -1.16
PRKD3-210ENST00000494667 ZEB1P37275 1124 aaPredicted RBP7.77□□□□□ -1.16
PRKD3-210ENST00000494667 PPARGC1BQ86YN6 1023 aaKnown RBP7.76□□□□□ -1.17
PRKD3-210ENST00000494667 PCGF6Q9BYE7 350 aa7.72□□□□□ -1.17
PRKD3-210ENST00000494667 CHIC1Q5VXU3 224 aa7.69□□□□□ -1.18
PRKD3-210ENST00000494667 TRIM26Q12899 539 aaPredicted RBP7.66□□□□□ -1.18
PRKD3-210ENST00000494667 ZCCHC6Q5VYS8 1495 aaKnown RBP7.63□□□□□ -1.19
PRKD3-210ENST00000494667 ACIN1Q9UKV3 1341 aaKnown RBP7.61□□□□□ -1.19
PRKD3-210ENST00000494667 NEUROD1Q13562 356 aa7.48□□□□□ -1.21
PRKD3-210ENST00000494667 CENPBP07199 599 aaPredicted RBP7.47□□□□□ -1.21
PRKD3-210ENST00000494667 SUPT5HO00267 1087 aaKnown RBP7.46□□□□□ -1.22
PRKD3-210ENST00000494667 GTF3C3Q9Y5Q9 886 aa7.43□□□□□ -1.22
PRKD3-210ENST00000494667 CLSPNQ9HAW4 1339 aa7.42□□□□□ -1.22
PRKD3-210ENST00000494667 SHROOM4Q9ULL8 1493 aa7.42□□□□□ -1.22
PRKD3-210ENST00000494667 BCL11AQ9H165 835 aa7.35□□□□□ -1.23
PRKD3-210ENST00000494667 TRIM41Q8WV44 630 aa7.34□□□□□ -1.23
PRKD3-210ENST00000494667 ABCC9O60706 1549 aa7.32□□□□□ -1.24
PRKD3-210ENST00000494667 LOC105371045A0A1W2PR82 267 aa7.31□□□□□ -1.24
PRKD3-210ENST00000494667 ANP32EQ9BTT0 268 aa7.3□□□□□ -1.24
PRKD3-210ENST00000494667 DIEXFQ68CQ4 756 aaKnown RBP7.3□□□□□ -1.24
PRKD3-210ENST00000494667 WRNQ14191 1432 aaPredicted RBP eCLIP7.27□□□□□ -1.25
PRKD3-210ENST00000494667 FAM9AQ8IZU1 332 aaPredicted RBP7.26□□□□□ -1.25
PRKD3-210ENST00000494667 ERICH6Q7L0X2 663 aa7.22□□□□□ -1.25
PRKD3-210ENST00000494667 PRKCSHP14314 528 aaPredicted RBP7.22□□□□□ -1.25
PRKD3-210ENST00000494667 RB1CC1Q8TDY2 1594 aa7.21□□□□□ -1.26
PRKD3-210ENST00000494667 APLP2Q06481 763 aa7.21□□□□□ -1.26
PRKD3-210ENST00000494667 ZNF316A6NFI3 1004 aaPredicted RBP7.19□□□□□ -1.26
PRKD3-210ENST00000494667 TSHZ2Q9NRE2 1034 aa7.15□□□□□ -1.26
PRKD3-210ENST00000494667 EIF4G1Q04637 1599 aaKnown RBP7.15□□□□□ -1.26
PRKD3-210ENST00000494667 AEBP2Q6ZN18 517 aaPredicted RBP7.15□□□□□ -1.27
PRKD3-210ENST00000494667 SUPT16HQ9Y5B9 1047 aaKnown RBP7.13□□□□□ -1.27
PRKD3-210ENST00000494667 CCER1Q8TC90 406 aaPredicted RBP7.12□□□□□ -1.27
PRKD3-210ENST00000494667 CSRNP3Q8WYN3 585 aa7.11□□□□□ -1.27
PRKD3-210ENST00000494667 RSF1Q96T23 1441 aaPredicted RBP7.1□□□□□ -1.27
PRKD3-210ENST00000494667 MYT1LQ9UL68 1186 aa7.1□□□□□ -1.27
PRKD3-210ENST00000494667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.08□□□□□ -1.28
PRKD3-210ENST00000494667 MIER1Q8N108 512 aa7.06□□□□□ -1.28
PRKD3-210ENST00000494667 FANCIQ9NVI1 1328 aa7.01□□□□□ -1.29
PRKD3-210ENST00000494667 TNIKQ9UKE5 1360 aa7□□□□□ -1.29
PRKD3-210ENST00000494667 EEA1Q15075 1411 aa7□□□□□ -1.29
PRKD3-210ENST00000494667 ERICH6BQ5W0A0 696 aa6.99□□□□□ -1.29
PRKD3-210ENST00000494667 CEP162Q5TB80 1403 aa6.97□□□□□ -1.29
PRKD3-210ENST00000494667 BAZ1AQ9NRL2 1556 aaPredicted RBP6.97□□□□□ -1.29
PRKD3-210ENST00000494667 CUX2O14529 1486 aa6.96□□□□□ -1.3
PRKD3-210ENST00000494667 YTHDC1Q96MU7 727 aaKnown RBP6.94□□□□□ -1.3
PRKD3-210ENST00000494667 RBM19Q9Y4C8 960 aaKnown RBP6.94□□□□□ -1.3
PRKD3-210ENST00000494667 KIF21BO75037 1637 aa6.93□□□□□ -1.3
PRKD3-210ENST00000494667 NACADO15069 1562 aa6.91□□□□□ -1.3
PRKD3-210ENST00000494667 MSH5O43196 834 aa6.9□□□□□ -1.3
PRKD3-210ENST00000494667 UBE2Q2Q8WVN8 375 aa6.89□□□□□ -1.31
PRKD3-210ENST00000494667 GOLGA3Q08378 1498 aa6.88□□□□□ -1.31
PRKD3-210ENST00000494667 BAZ1BQ9UIG0 1483 aaKnown RBP6.87□□□□□ -1.31
PRKD3-210ENST00000494667 DHX57Q6P158 1386 aaKnown RBP6.86□□□□□ -1.31
PRKD3-210ENST00000494667 VPS8Q8N3P4 1428 aa6.84□□□□□ -1.31
PRKD3-210ENST00000494667 MROH2BQ7Z745 1585 aa6.83□□□□□ -1.32
PRKD3-210ENST00000494667 TOP2AP11388 1531 aaKnown RBP6.83□□□□□ -1.32
PRKD3-210ENST00000494667 WIZO95785 1651 aa6.83□□□□□ -1.32
PRKD3-210ENST00000494667 CCER2I3L3R5 266 aa6.82□□□□□ -1.32
PRKD3-210ENST00000494667 CEP164Q9UPV0 1460 aa6.81□□□□□ -1.32
PRKD3-210ENST00000494667 SCRIBQ14160 1630 aa6.81□□□□□ -1.32
PRKD3-210ENST00000494667 ABCC8Q09428 1581 aa6.81□□□□□ -1.32
PRKD3-210ENST00000494667 RRBP1Q9P2E9 1410 aaKnown RBP6.81□□□□□ -1.32
PRKD3-210ENST00000494667 DEKP35659 375 aaKnown RBP6.8□□□□□ -1.32
PRKD3-210ENST00000494667 CCDC88BA6NC98 1476 aa6.8□□□□□ -1.32
PRKD3-210ENST00000494667 SMARCA2P51531 1590 aa6.8□□□□□ -1.32
PRKD3-210ENST00000494667 CLIP1P30622 1438 aa6.78□□□□□ -1.32
PRKD3-210ENST00000494667 FKBP8Q14318 412 aa6.77□□□□□ -1.32
PRKD3-210ENST00000494667 C11orf95C9JLR9 678 aaPredicted RBP6.77□□□□□ -1.33
PRKD3-210ENST00000494667 MAPKBP1O60336 1514 aa6.77□□□□□ -1.33
PRKD3-210ENST00000494667 ANO8Q9HCE9 1232 aaPredicted RBP6.77□□□□□ -1.33
PRKD3-210ENST00000494667 SYNJ1O43426 1573 aa6.77□□□□□ -1.33
PRKD3-210ENST00000494667 NCAPD3P42695 1498 aa6.76□□□□□ -1.33
PRKD3-210ENST00000494667 NEFLP07196 543 aa6.75□□□□□ -1.33
PRKD3-210ENST00000494667 TIMELESSQ9UNS1 1208 aa6.74□□□□□ -1.33
PRKD3-210ENST00000494667 SOGA1O94964 1423 aa6.74□□□□□ -1.33
PRKD3-210ENST00000494667 CECR2Q9BXF3 1484 aa6.74□□□□□ -1.33
PRKD3-210ENST00000494667 WASHC2AQ641Q2 1341 aa6.74□□□□□ -1.33
PRKD3-210ENST00000494667 ERICH3Q5RHP9 1530 aa6.74□□□□□ -1.33
PRKD3-210ENST00000494667 MAP3K1Q13233 1512 aa6.73□□□□□ -1.33
PRKD3-210ENST00000494667 PPP1R15AO75807 674 aaPredicted RBP6.73□□□□□ -1.33
PRKD3-210ENST00000494667 CDK11AQ9UQ88 783 aaPredicted RBP6.72□□□□□ -1.33
PRKD3-210ENST00000494667 PEG3Q9GZU2 1588 aa6.72□□□□□ -1.33
PRKD3-210ENST00000494667 WASHC2CQ9Y4E1 1318 aa6.71□□□□□ -1.33
PRKD3-210ENST00000494667 SALL2Q9Y467 1007 aaPredicted RBP6.71□□□□□ -1.34
PRKD3-210ENST00000494667 NOP58Q9Y2X3 529 aaKnown RBP6.69□□□□□ -1.34
PRKD3-210ENST00000494667 USP35Q9P2H5 1018 aa6.69□□□□□ -1.34
PRKD3-210ENST00000494667 WDR97A6NE52 1622 aa6.68□□□□□ -1.34
PRKD3-210ENST00000494667 RUSC2Q8N2Y8 1516 aa6.68□□□□□ -1.34
PRKD3-210ENST00000494667 SMARCA4P51532 1647 aa6.68□□□□□ -1.34
PRKD3-210ENST00000494667 PPP4R2Q9NY27 417 aa6.67□□□□□ -1.34
PRKD3-210ENST00000494667 ARAP1Q96P48 1450 aa6.67□□□□□ -1.34
PRKD3-210ENST00000494667 KCNH8Q96L42 1107 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms