RNA–Protein interactions for RNA: ENST00000406438.4

SMCR8-201, Transcript of Smith-Magenis syndrome chromosome region, candidate 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCR8, Length 8,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCR8-201ENST00000406438 DCAF8L2P0C7V8 631 aa20.49■□□□□ 0.87
SMCR8-201ENST00000406438 PELP1Q8IZL8 1130 aaKnown RBP19.39■□□□□ 0.69
SMCR8-201ENST00000406438 SUPT5HO00267 1087 aaKnown RBP19.29■□□□□ 0.68
SMCR8-201ENST00000406438 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
SMCR8-201ENST00000406438 APLP2Q06481 763 aa18.91■□□□□ 0.62
SMCR8-201ENST00000406438 SHROOM4Q9ULL8 1493 aa18.87■□□□□ 0.61
SMCR8-201ENST00000406438 FAM9AQ8IZU1 332 aaPredicted RBP18.84■□□□□ 0.61
SMCR8-201ENST00000406438 NISCHQ9Y2I1 1504 aa18.82■□□□□ 0.6
SMCR8-201ENST00000406438 ERICH6Q7L0X2 663 aa18.55■□□□□ 0.56
SMCR8-201ENST00000406438 CCER1Q8TC90 406 aaPredicted RBP18.52■□□□□ 0.55
SMCR8-201ENST00000406438 TTBK1Q5TCY1 1321 aaPredicted RBP18.34■□□□□ 0.53
SMCR8-201ENST00000406438 MYT1Q01538 1121 aa18.31■□□□□ 0.52
SMCR8-201ENST00000406438 CENPBP07199 599 aaPredicted RBP18.3■□□□□ 0.52
SMCR8-201ENST00000406438 PCGF6Q9BYE7 350 aa18.24■□□□□ 0.51
SMCR8-201ENST00000406438 ATP1B4Q9UN42 357 aaPredicted RBP18.19■□□□□ 0.5
SMCR8-201ENST00000406438 RANGAP1P46060 587 aaPredicted RBP18.14■□□□□ 0.5
SMCR8-201ENST00000406438 ZEB1P37275 1124 aaPredicted RBP18.14■□□□□ 0.49
SMCR8-201ENST00000406438 NEFLP07196 543 aa18.09■□□□□ 0.49
SMCR8-201ENST00000406438 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
SMCR8-201ENST00000406438 UBTFP17480 764 aaKnown RBP17.91■□□□□ 0.46
SMCR8-201ENST00000406438 DAXXQ9UER7 740 aaPredicted RBP17.81■□□□□ 0.44
SMCR8-201ENST00000406438 YTHDC1Q96MU7 727 aaKnown RBP17.76■□□□□ 0.43
SMCR8-201ENST00000406438 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
SMCR8-201ENST00000406438 POLR3GLQ9BT43 218 aa17.52■□□□□ 0.4
SMCR8-201ENST00000406438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.47■□□□□ 0.39
SMCR8-201ENST00000406438 HNRNPUL2Q1KMD3 747 aaKnown RBP17.47■□□□□ 0.39
SMCR8-201ENST00000406438 PPARGC1BQ86YN6 1023 aaKnown RBP17.41■□□□□ 0.38
SMCR8-201ENST00000406438 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
SMCR8-201ENST00000406438 ITGAEP38570 1179 aa17.37■□□□□ 0.37
SMCR8-201ENST00000406438 CHIC1Q5VXU3 224 aa17.37■□□□□ 0.37
SMCR8-201ENST00000406438 TRIM26Q12899 539 aaPredicted RBP17.36■□□□□ 0.37
SMCR8-201ENST00000406438 ZNF316A6NFI3 1004 aaPredicted RBP17.33■□□□□ 0.37
SMCR8-201ENST00000406438 CLSPNQ9HAW4 1339 aa17.27■□□□□ 0.36
SMCR8-201ENST00000406438 CNGB1Q14028 1251 aaPredicted RBP17.26■□□□□ 0.35
SMCR8-201ENST00000406438 RTL5Q5HYW3 569 aaPredicted RBP17.22■□□□□ 0.35
SMCR8-201ENST00000406438 HRCP23327 699 aa17.11■□□□□ 0.33
SMCR8-201ENST00000406438 ZBTB47Q9UFB7 747 aaPredicted RBP17.02■□□□□ 0.32
SMCR8-201ENST00000406438 FAM50AQ14320 339 aaKnown RBP16.95■□□□□ 0.3
SMCR8-201ENST00000406438 DIEXFQ68CQ4 756 aaKnown RBP16.91■□□□□ 0.3
SMCR8-201ENST00000406438 SLC24A1O60721 1099 aa16.91■□□□□ 0.3
SMCR8-201ENST00000406438 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
SMCR8-201ENST00000406438 LOC105371045A0A1W2PR82 267 aa16.86■□□□□ 0.29
SMCR8-201ENST00000406438 CANXP27824 592 aaKnown RBP16.79■□□□□ 0.28
SMCR8-201ENST00000406438 NEFMP07197 916 aa16.79■□□□□ 0.28
SMCR8-201ENST00000406438 NEUROD1Q13562 356 aa16.79■□□□□ 0.28
SMCR8-201ENST00000406438 CDK11AQ9UQ88 783 aaPredicted RBP16.78■□□□□ 0.28
SMCR8-201ENST00000406438 ANP32CO43423 234 aa16.77■□□□□ 0.28
SMCR8-201ENST00000406438 BCANQ96GW7 911 aa16.73■□□□□ 0.27
SMCR8-201ENST00000406438 BCL11AQ9H165 835 aa16.73■□□□□ 0.27
SMCR8-201ENST00000406438 ZNF326Q5BKZ1 582 aaKnown RBP16.72■□□□□ 0.27
SMCR8-201ENST00000406438 FBLN2P98095 1184 aa16.58■□□□□ 0.25
SMCR8-201ENST00000406438 ANP32AP39687 249 aaKnown RBP16.57■□□□□ 0.24
SMCR8-201ENST00000406438 ANP32BQ92688 251 aaKnown RBP16.57■□□□□ 0.24
SMCR8-201ENST00000406438 HSP90AA1P07900 732 aaKnown RBP16.5■□□□□ 0.23
SMCR8-201ENST00000406438 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SMCR8-201ENST00000406438 ESF1Q9H501 851 aaKnown RBP16.46■□□□□ 0.22
SMCR8-201ENST00000406438 UPF2Q9HAU5 1272 aaKnown RBP16.42■□□□□ 0.22
SMCR8-201ENST00000406438 ABCC9O60706 1549 aa16.42■□□□□ 0.22
SMCR8-201ENST00000406438 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
SMCR8-201ENST00000406438 NPM2Q86SE8 214 aaKnown RBP16.38■□□□□ 0.21
SMCR8-201ENST00000406438 STAG3Q9UJ98 1225 aa16.36■□□□□ 0.21
SMCR8-201ENST00000406438 ZNF777Q9ULD5 760 aaPredicted RBP16.32■□□□□ 0.2
SMCR8-201ENST00000406438 ARID3CA6NKF2 412 aa16.28■□□□□ 0.2
SMCR8-201ENST00000406438 EIF5BO60841 1220 aaKnown RBP16.27■□□□□ 0.19
SMCR8-201ENST00000406438 P3H3Q8IVL6 736 aa16.26■□□□□ 0.19
SMCR8-201ENST00000406438 CDK11BP21127 795 aaKnown RBP16.26■□□□□ 0.19
SMCR8-201ENST00000406438 GLIPR1L2Q4G1C9 344 aa16.26■□□□□ 0.19
SMCR8-201ENST00000406438 PLPPR3Q6T4P5 718 aa16.25■□□□□ 0.19
SMCR8-201ENST00000406438 CHGAP10645 457 aaKnown RBP16.23■□□□□ 0.19
SMCR8-201ENST00000406438 TONSLQ96HA7 1378 aa16.22■□□□□ 0.19
SMCR8-201ENST00000406438 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.18■□□□□ 0.18
SMCR8-201ENST00000406438 NPM1P06748 294 aaKnown RBP eCLIP16.14■□□□□ 0.17
SMCR8-201ENST00000406438 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
SMCR8-201ENST00000406438 FKBP8Q14318 412 aa16.13■□□□□ 0.17
SMCR8-201ENST00000406438 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
SMCR8-201ENST00000406438 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SMCR8-201ENST00000406438 ACIN1Q9UKV3 1341 aaKnown RBP16.11■□□□□ 0.17
SMCR8-201ENST00000406438 MYH16Q9H6N6 1097 aa16.11■□□□□ 0.17
SMCR8-201ENST00000406438 TMC1Q8TDI8 760 aa16.11■□□□□ 0.17
SMCR8-201ENST00000406438 WDR43Q15061 677 aaKnown RBP eCLIP16.1■□□□□ 0.17
SMCR8-201ENST00000406438 FAM9BQ8IZU0 186 aa16.1■□□□□ 0.17
SMCR8-201ENST00000406438 A0A0G2JS52 829 aa16.09■□□□□ 0.17
SMCR8-201ENST00000406438 SALL2Q9Y467 1007 aaPredicted RBP16.07■□□□□ 0.16
SMCR8-201ENST00000406438 CCDC136Q96JN2 1154 aa16.06■□□□□ 0.16
SMCR8-201ENST00000406438 ARXQ96QS3 562 aa16.03■□□□□ 0.16
SMCR8-201ENST00000406438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.02■□□□□ 0.16
SMCR8-201ENST00000406438 NBR1Q14596 966 aa16.02■□□□□ 0.16
SMCR8-201ENST00000406438 CSRNP3Q8WYN3 585 aa16.02■□□□□ 0.15
SMCR8-201ENST00000406438 DDX10Q13206 875 aaKnown RBP15.97■□□□□ 0.15
SMCR8-201ENST00000406438 NCLP19338 710 aaKnown RBP15.95■□□□□ 0.14
SMCR8-201ENST00000406438 BECN1Q14457 450 aa15.93■□□□□ 0.14
SMCR8-201ENST00000406438 TRIM44Q96DX7 344 aaPredicted RBP15.91■□□□□ 0.14
SMCR8-201ENST00000406438 KDM2AQ9Y2K7 1162 aa15.91■□□□□ 0.14
SMCR8-201ENST00000406438 TSPY4P0CV99 314 aa15.9■□□□□ 0.14
SMCR8-201ENST00000406438 TSPY10P0CW01 314 aa15.9■□□□□ 0.14
SMCR8-201ENST00000406438 C14orf37Q86TY3 774 aa15.9■□□□□ 0.14
SMCR8-201ENST00000406438 ZRSR1Q15695 479 aaKnown RBP15.89■□□□□ 0.13
SMCR8-201ENST00000406438 ZBTB7CA1YPR0 619 aa15.89■□□□□ 0.13
SMCR8-201ENST00000406438 ANP32EQ9BTT0 268 aa15.88■□□□□ 0.13
SMCR8-201ENST00000406438 GOLGA6L22H0YM25 854 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms