RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
SMCHD1-204ENST00000581226 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
SMCHD1-204ENST00000581226 SENP3Q9H4L4 574 aaPredicted RBP20.7■□□□□ 0.9
SMCHD1-204ENST00000581226 PHF23Q9BUL5 403 aaPredicted RBP20.57■□□□□ 0.88
SMCHD1-204ENST00000581226 FOXD1Q16676 465 aa19.33■□□□□ 0.68
SMCHD1-204ENST00000581226 POTEDQ86YR6 584 aa19.09■□□□□ 0.65
SMCHD1-204ENST00000581226 PLPPR3Q6T4P5 718 aa19.05■□□□□ 0.64
SMCHD1-204ENST00000581226 MSH5O43196 834 aa18.2■□□□□ 0.5
SMCHD1-204ENST00000581226 ADRA2BP18089 450 aa18.12■□□□□ 0.49
SMCHD1-204ENST00000581226 PPP6R1Q9UPN7 881 aa18.12■□□□□ 0.49
SMCHD1-204ENST00000581226 PIAS4Q8N2W9 510 aaPredicted RBP18.04■□□□□ 0.48
SMCHD1-204ENST00000581226 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
SMCHD1-204ENST00000581226 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
SMCHD1-204ENST00000581226 KCNA4P22459 653 aa16.54■□□□□ 0.24
SMCHD1-204ENST00000581226 MAPK8IP2Q13387 824 aaPredicted RBP16.43■□□□□ 0.22
SMCHD1-204ENST00000581226 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
SMCHD1-204ENST00000581226 DMRT2Q9Y5R5 561 aa16.35■□□□□ 0.21
SMCHD1-204ENST00000581226 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
SMCHD1-204ENST00000581226 NPM3O75607 178 aaKnown RBP16.15■□□□□ 0.18
SMCHD1-204ENST00000581226 RNF216Q9NWF9 866 aaPredicted RBP15.95■□□□□ 0.14
SMCHD1-204ENST00000581226 CACNB1Q02641 598 aaPredicted RBP15.86■□□□□ 0.13
SMCHD1-204ENST00000581226 HOXD11P31277 338 aaPredicted RBP15.84■□□□□ 0.13
SMCHD1-204ENST00000581226 DCAF8L1A6NGE4 600 aa15.82■□□□□ 0.12
SMCHD1-204ENST00000581226 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
SMCHD1-204ENST00000581226 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
SMCHD1-204ENST00000581226 RNF39Q9H2S5 420 aa15.49■□□□□ 0.07
SMCHD1-204ENST00000581226 EHMT2Q96KQ7 1210 aa15.48■□□□□ 0.07
SMCHD1-204ENST00000581226 C1QBPQ07021 282 aaKnown RBP15.25■□□□□ 0.03
SMCHD1-204ENST00000581226 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
SMCHD1-204ENST00000581226 ZBTB22O15209 634 aa15.21■□□□□ 0.03
SMCHD1-204ENST00000581226 SLC4A2P04920 1241 aa15.21■□□□□ 0.03
SMCHD1-204ENST00000581226 FOXD4L1Q9NU39 408 aa15.19■□□□□ 0.02
SMCHD1-204ENST00000581226 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.15■□□□□ 0.02
SMCHD1-204ENST00000581226 MYCNP04198 464 aaPredicted RBP14.91□□□□□ -0.02
SMCHD1-204ENST00000581226 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
SMCHD1-204ENST00000581226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
SMCHD1-204ENST00000581226 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
SMCHD1-204ENST00000581226 SAMD1Q6SPF0 538 aaPredicted RBP14.7□□□□□ -0.06
SMCHD1-204ENST00000581226 POTEHQ6S545 545 aa14.68□□□□□ -0.06
SMCHD1-204ENST00000581226 ATXN8OSP0DMR3 200 aa14.65□□□□□ -0.06
SMCHD1-204ENST00000581226 APLP2Q06481 763 aa14.58□□□□□ -0.08
SMCHD1-204ENST00000581226 ATF5Q9Y2D1 282 aaPredicted RBP14.52□□□□□ -0.09
SMCHD1-204ENST00000581226 CAPN15O75808 1086 aa14.5□□□□□ -0.09
SMCHD1-204ENST00000581226 SPINK5Q9NQ38 1064 aaPredicted RBP14.47□□□□□ -0.09
SMCHD1-204ENST00000581226 DSG3P32926 999 aa14.41□□□□□ -0.1
SMCHD1-204ENST00000581226 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
SMCHD1-204ENST00000581226 ZNF219Q9P2Y4 722 aaPredicted RBP14.34□□□□□ -0.11
SMCHD1-204ENST00000581226 ABCB7O75027 752 aa14.15□□□□□ -0.14
SMCHD1-204ENST00000581226 POLA2Q14181 598 aa14.15□□□□□ -0.14
SMCHD1-204ENST00000581226 FBLN2P98095 1184 aa13.92□□□□□ -0.18
SMCHD1-204ENST00000581226 ZBTB12Q9Y330 459 aaPredicted RBP13.91□□□□□ -0.18
SMCHD1-204ENST00000581226 MKRN4PQ13434 485 aaPredicted RBP13.88□□□□□ -0.19
SMCHD1-204ENST00000581226 FKBP8Q14318 412 aa13.78□□□□□ -0.2
SMCHD1-204ENST00000581226 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
SMCHD1-204ENST00000581226 SPDYE4A6NLX3 237 aa13.65□□□□□ -0.22
SMCHD1-204ENST00000581226 OSCARQ8IYS5 282 aa13.65□□□□□ -0.22
SMCHD1-204ENST00000581226 CHRDL2Q6WN34 429 aa13.61□□□□□ -0.23
SMCHD1-204ENST00000581226 SPDYE2BA6NHP3 402 aa13.54□□□□□ -0.24
SMCHD1-204ENST00000581226 SPDYE6P0CI01 402 aa13.54□□□□□ -0.24
SMCHD1-204ENST00000581226 SPDYE2Q495Y8 402 aa13.54□□□□□ -0.24
SMCHD1-204ENST00000581226 ZNF692Q9BU19 519 aaPredicted RBP13.54□□□□□ -0.24
SMCHD1-204ENST00000581226 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
SMCHD1-204ENST00000581226 PROM2Q8N271 834 aa13.39□□□□□ -0.27
SMCHD1-204ENST00000581226 AKT1S1Q96B36 256 aa13.38□□□□□ -0.27
SMCHD1-204ENST00000581226 PABPN1Q86U42 306 aaKnown RBP eCLIP13.35□□□□□ -0.27
SMCHD1-204ENST00000581226 REM2Q8IYK8 340 aaPredicted RBP13.27□□□□□ -0.29
SMCHD1-204ENST00000581226 FBXO3Q9UK99 471 aa13.26□□□□□ -0.29
SMCHD1-204ENST00000581226 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
SMCHD1-204ENST00000581226 PIP4P2Q8N4L2 257 aa13.21□□□□□ -0.29
SMCHD1-204ENST00000581226 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
SMCHD1-204ENST00000581226 STAG3Q9UJ98 1225 aa13.15□□□□□ -0.3
SMCHD1-204ENST00000581226 SPDYE1Q8NFV5 336 aaPredicted RBP13.12□□□□□ -0.31
SMCHD1-204ENST00000581226 HAX1O00165 279 aa13.1□□□□□ -0.31
SMCHD1-204ENST00000581226 CLEC11AQ9Y240 323 aa13.08□□□□□ -0.32
SMCHD1-204ENST00000581226 VASPP50552 380 aaPredicted RBP13.06□□□□□ -0.32
SMCHD1-204ENST00000581226 FXR2P51116 673 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMCHD1-204ENST00000581226 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
SMCHD1-204ENST00000581226 MIER1Q8N108 512 aa12.96□□□□□ -0.33
SMCHD1-204ENST00000581226 PLCD3Q8N3E9 789 aa12.95□□□□□ -0.34
SMCHD1-204ENST00000581226 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
SMCHD1-204ENST00000581226 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
SMCHD1-204ENST00000581226 EVX2Q03828 476 aa12.87□□□□□ -0.35
SMCHD1-204ENST00000581226 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
SMCHD1-204ENST00000581226 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
SMCHD1-204ENST00000581226 CREBZFQ9NS37 354 aa12.81□□□□□ -0.36
SMCHD1-204ENST00000581226 ZBTB47Q9UFB7 747 aaPredicted RBP12.79□□□□□ -0.36
SMCHD1-204ENST00000581226 AMER1Q5JTC6 1135 aaPredicted RBP12.75□□□□□ -0.37
SMCHD1-204ENST00000581226 CHADLQ6NUI6 762 aa12.74□□□□□ -0.37
SMCHD1-204ENST00000581226 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
SMCHD1-204ENST00000581226 RTN4Q9NQC3 1192 aaKnown RBP12.71□□□□□ -0.37
SMCHD1-204ENST00000581226 PLSCR2Q9NRY7 297 aa12.68□□□□□ -0.38
SMCHD1-204ENST00000581226 MNX1P50219 401 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-204ENST00000581226 C19orf67A6NJJ6 358 aa12.65□□□□□ -0.38
SMCHD1-204ENST00000581226 NPM1P06748 294 aaKnown RBP eCLIP12.62□□□□□ -0.39
SMCHD1-204ENST00000581226 FARP1Q9Y4F1 1045 aaPredicted RBP12.62□□□□□ -0.39
SMCHD1-204ENST00000581226 NUBP1P53384 320 aa12.57□□□□□ -0.4
SMCHD1-204ENST00000581226 GABBR2O75899 941 aa12.56□□□□□ -0.4
SMCHD1-204ENST00000581226 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
SMCHD1-204ENST00000581226 DCAF8Q5TAQ9 597 aa12.51□□□□□ -0.41
SMCHD1-204ENST00000581226 PKD2Q13563 968 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms