Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
CDH4P55283 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CDH4P55283 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CDH4P55283 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CDH4P55283 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
CDH4P55283 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
CDH4P55283 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDH4P55283 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDH4P55283 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.42■■□□□ 1.82
CDH4P55283 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDH4P55283 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
CDH4P55283 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDH4P55283 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CDH4P55283 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDH4P55283 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDH4P55283 MIR3648-2-201ENST00000581792 180 ntBASIC26.4■■□□□ 1.82
CDH4P55283 MIR3648-1-201ENST00000615959 180 ntBASIC26.4■■□□□ 1.82
CDH4P55283 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CDH4P55283 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDH4P55283 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CDH4P55283 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.39■■□□□ 1.82
CDH4P55283 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.39■■□□□ 1.81
CDH4P55283 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.39■■□□□ 1.81
CDH4P55283 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.38■■□□□ 1.81
CDH4P55283 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDH4P55283 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.38■■□□□ 1.81
CDH4P55283 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
CDH4P55283 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDH4P55283 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.38■■□□□ 1.81
CDH4P55283 CR559946.2-201ENST00000623684 991 ntBASIC26.38■■□□□ 1.81
CDH4P55283 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDH4P55283 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDH4P55283 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CDH4P55283 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDH4P55283 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDH4P55283 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.36■■□□□ 1.81
CDH4P55283 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CDH4P55283 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.35■■□□□ 1.81
CDH4P55283 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.35■■□□□ 1.81
CDH4P55283 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.35■■□□□ 1.81
CDH4P55283 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDH4P55283 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.34■■□□□ 1.81
CDH4P55283 AC016575.1-201ENST00000607026 382 ntBASIC26.34■■□□□ 1.81
CDH4P55283 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDH4P55283 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.33■■□□□ 1.8
CDH4P55283 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.33■■□□□ 1.8
CDH4P55283 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.32■■□□□ 1.8
CDH4P55283 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.31■■□□□ 1.8
CDH4P55283 HLA-V-202ENST00000446817 847 ntBASIC26.31■■□□□ 1.8
CDH4P55283 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.3■■□□□ 1.8
CDH4P55283 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.3■■□□□ 1.8
CDH4P55283 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.3■■□□□ 1.8
CDH4P55283 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CDH4P55283 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.29■■□□□ 1.8
CDH4P55283 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CDH4P55283 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CDH4P55283 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.28■■□□□ 1.8
CDH4P55283 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.28■■□□□ 1.8
CDH4P55283 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CDH4P55283 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDH4P55283 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CDH4P55283 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CDH4P55283 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CDH4P55283 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.27■■□□□ 1.8
CDH4P55283 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CDH4P55283 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CDH4P55283 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CDH4P55283 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.27■■□□□ 1.8
CDH4P55283 AC100797.4-201ENST00000631653 1827 ntBASIC26.26■■□□□ 1.79
CDH4P55283 MIR639-201ENST00000384974 98 ntBASIC26.26■■□□□ 1.79
CDH4P55283 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.26■■□□□ 1.79
CDH4P55283 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.26■■□□□ 1.79
CDH4P55283 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CDH4P55283 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.25■■□□□ 1.79
CDH4P55283 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.25■■□□□ 1.79
CDH4P55283 ABCB10P3-201ENST00000561950 2166 ntBASIC26.24■■□□□ 1.79
CDH4P55283 AC110285.7-201ENST00000624417 1536 ntBASIC26.24■■□□□ 1.79
CDH4P55283 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CDH4P55283 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.23■■□□□ 1.79
CDH4P55283 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CDH4P55283 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CDH4P55283 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CDH4P55283 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CDH4P55283 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CDH4P55283 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CDH4P55283 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
CDH4P55283 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
CDH4P55283 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
CDH4P55283 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CDH4P55283 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CDH4P55283 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CDH4P55283 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.19■■□□□ 1.78
CDH4P55283 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.19■■□□□ 1.78
CDH4P55283 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.18■■□□□ 1.78
CDH4P55283 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
CDH4P55283 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
CDH4P55283 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDH4P55283 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDH4P55283 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.17■■□□□ 1.78
CDH4P55283 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms