Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.42■■■□□ 2.46
SHMT1P34896 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
SHMT1P34896 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHMT1P34896 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.41■■■□□ 2.46
SHMT1P34896 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHMT1P34896 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.39■■■□□ 2.46
SHMT1P34896 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
SHMT1P34896 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
SHMT1P34896 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
SHMT1P34896 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHMT1P34896 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHMT1P34896 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHMT1P34896 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHMT1P34896 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.37■■■□□ 2.45
SHMT1P34896 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHMT1P34896 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
SHMT1P34896 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
SHMT1P34896 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHMT1P34896 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.35■■■□□ 2.45
SHMT1P34896 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHMT1P34896 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHMT1P34896 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.34■■■□□ 2.45
SHMT1P34896 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHMT1P34896 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHMT1P34896 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.33■■■□□ 2.45
SHMT1P34896 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SHMT1P34896 AC110285.7-201ENST00000624417 1536 ntBASIC30.32■■■□□ 2.44
SHMT1P34896 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
SHMT1P34896 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
SHMT1P34896 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
SHMT1P34896 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.3■■■□□ 2.44
SHMT1P34896 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHMT1P34896 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHMT1P34896 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
SHMT1P34896 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SHMT1P34896 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHMT1P34896 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHMT1P34896 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHMT1P34896 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHMT1P34896 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.28■■■□□ 2.44
SHMT1P34896 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.28■■■□□ 2.44
SHMT1P34896 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHMT1P34896 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHMT1P34896 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.27■■■□□ 2.44
SHMT1P34896 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SHMT1P34896 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.27■■■□□ 2.44
SHMT1P34896 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SHMT1P34896 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.27■■■□□ 2.44
SHMT1P34896 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
SHMT1P34896 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
SHMT1P34896 AC008813.1-201ENST00000536597 885 ntBASIC30.26■■■□□ 2.43
SHMT1P34896 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC30.26■■■□□ 2.43
SHMT1P34896 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHMT1P34896 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHMT1P34896 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.25■■■□□ 2.43
SHMT1P34896 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHMT1P34896 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHMT1P34896 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.25■■■□□ 2.43
SHMT1P34896 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHMT1P34896 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.23■■■□□ 2.43
SHMT1P34896 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SHMT1P34896 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHMT1P34896 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SHMT1P34896 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHMT1P34896 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.22■■■□□ 2.43
SHMT1P34896 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.21■■■□□ 2.43
SHMT1P34896 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.21■■■□□ 2.43
SHMT1P34896 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHMT1P34896 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.21■■■□□ 2.43
SHMT1P34896 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SHMT1P34896 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
SHMT1P34896 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHMT1P34896 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.19■■■□□ 2.42
SHMT1P34896 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SHMT1P34896 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SHMT1P34896 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
SHMT1P34896 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHMT1P34896 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHMT1P34896 GPX1-201ENST00000419349 1106 ntBASIC30.17■■■□□ 2.42
SHMT1P34896 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
SHMT1P34896 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHMT1P34896 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHMT1P34896 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHMT1P34896 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.16■■■□□ 2.42
SHMT1P34896 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.16■■■□□ 2.42
SHMT1P34896 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHMT1P34896 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SHMT1P34896 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHMT1P34896 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms