Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC29.7■■■□□ 2.35
PRPF40AO75400 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
PRPF40AO75400 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.7■■■□□ 2.34
PRPF40AO75400 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.34
PRPF40AO75400 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
PRPF40AO75400 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
PRPF40AO75400 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.69■■■□□ 2.34
PRPF40AO75400 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
PRPF40AO75400 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.69■■■□□ 2.34
PRPF40AO75400 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
PRPF40AO75400 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.68■■■□□ 2.34
PRPF40AO75400 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
PRPF40AO75400 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
PRPF40AO75400 AP004833.2-201ENST00000532228 1454 ntBASIC29.68■■■□□ 2.34
PRPF40AO75400 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
PRPF40AO75400 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
PRPF40AO75400 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
PRPF40AO75400 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
PRPF40AO75400 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
PRPF40AO75400 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
PRPF40AO75400 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
PRPF40AO75400 AC097358.2-201ENST00000607541 1159 ntBASIC29.66■■■□□ 2.34
PRPF40AO75400 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
PRPF40AO75400 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
PRPF40AO75400 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
PRPF40AO75400 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.64■■■□□ 2.34
PRPF40AO75400 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.64■■■□□ 2.34
PRPF40AO75400 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.64■■■□□ 2.34
PRPF40AO75400 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
PRPF40AO75400 LINC01003-201ENST00000564834 1764 ntBASIC29.64■■■□□ 2.34
PRPF40AO75400 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRPF40AO75400 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRPF40AO75400 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRPF40AO75400 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
PRPF40AO75400 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC29.63■■■□□ 2.33
PRPF40AO75400 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.63■■■□□ 2.33
PRPF40AO75400 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.63■■■□□ 2.33
PRPF40AO75400 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRPF40AO75400 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PRPF40AO75400 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PRPF40AO75400 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
PRPF40AO75400 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
PRPF40AO75400 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
PRPF40AO75400 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.62■■■□□ 2.33
PRPF40AO75400 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
PRPF40AO75400 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
PRPF40AO75400 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PRPF40AO75400 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
PRPF40AO75400 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
PRPF40AO75400 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.6■■■□□ 2.33
PRPF40AO75400 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PRPF40AO75400 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.6■■■□□ 2.33
PRPF40AO75400 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.59■■■□□ 2.33
PRPF40AO75400 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
PRPF40AO75400 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.58■■■□□ 2.33
PRPF40AO75400 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PRPF40AO75400 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.58■■■□□ 2.33
PRPF40AO75400 AC136428.2-201ENST00000563187 214 ntBASIC29.58■■■□□ 2.33
PRPF40AO75400 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.57■■■□□ 2.32
PRPF40AO75400 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.57■■■□□ 2.32
PRPF40AO75400 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
PRPF40AO75400 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC29.57■■■□□ 2.32
PRPF40AO75400 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
PRPF40AO75400 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.55■■■□□ 2.32
PRPF40AO75400 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.55■■■□□ 2.32
PRPF40AO75400 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
PRPF40AO75400 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC29.55■■■□□ 2.32
PRPF40AO75400 AL449106.1-201ENST00000608517 1980 ntBASIC29.53■■■□□ 2.32
PRPF40AO75400 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
PRPF40AO75400 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
PRPF40AO75400 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
PRPF40AO75400 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
PRPF40AO75400 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.52■■■□□ 2.32
PRPF40AO75400 AC127502.1-201ENST00000399971 1502 ntBASIC29.52■■■□□ 2.32
PRPF40AO75400 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
PRPF40AO75400 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.52■■■□□ 2.32
PRPF40AO75400 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
PRPF40AO75400 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
PRPF40AO75400 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PRPF40AO75400 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PRPF40AO75400 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.5■■■□□ 2.31
PRPF40AO75400 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.49■■■□□ 2.31
PRPF40AO75400 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
PRPF40AO75400 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.48■■■□□ 2.31
PRPF40AO75400 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.48■■■□□ 2.31
PRPF40AO75400 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.47■■■□□ 2.31
PRPF40AO75400 AC100797.4-201ENST00000631653 1827 ntBASIC29.46■■■□□ 2.31
PRPF40AO75400 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
PRPF40AO75400 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PRPF40AO75400 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.46■■■□□ 2.31
PRPF40AO75400 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PRPF40AO75400 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.45■■■□□ 2.31
PRPF40AO75400 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
PRPF40AO75400 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.3
PRPF40AO75400 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
PRPF40AO75400 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PRPF40AO75400 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.44■■■□□ 2.3
PRPF40AO75400 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.44■■■□□ 2.3
PRPF40AO75400 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC29.44■■■□□ 2.3
PRPF40AO75400 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms