Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB3O15347 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB3O15347 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB3O15347 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HMGB3O15347 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB3O15347 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB3O15347 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB3O15347 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB3O15347 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HMGB3O15347 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB3O15347 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB3O15347 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB3O15347 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB3O15347 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB3O15347 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB3O15347 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HMGB3O15347 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB3O15347 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB3O15347 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB3O15347 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGB3O15347 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGB3O15347 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB3O15347 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HMGB3O15347 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB3O15347 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB3O15347 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB3O15347 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB3O15347 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB3O15347 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB3O15347 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB3O15347 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HMGB3O15347 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HMGB3O15347 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB3O15347 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB3O15347 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB3O15347 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB3O15347 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB3O15347 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB3O15347 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB3O15347 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
HMGB3O15347 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB3O15347 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB3O15347 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB3O15347 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB3O15347 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB3O15347 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB3O15347 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB3O15347 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.45■□□□□ 0.86
HMGB3O15347 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB3O15347 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HMGB3O15347 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB3O15347 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB3O15347 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB3O15347 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
HMGB3O15347 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
HMGB3O15347 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB3O15347 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB3O15347 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB3O15347 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB3O15347 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB3O15347 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB3O15347 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB3O15347 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB3O15347 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB3O15347 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HMGB3O15347 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.4■□□□□ 0.86
HMGB3O15347 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB3O15347 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB3O15347 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB3O15347 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB3O15347 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB3O15347 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HMGB3O15347 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB3O15347 AC006077.2-201ENST00000623591 457 ntBASIC20.38■□□□□ 0.85
HMGB3O15347 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB3O15347 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB3O15347 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB3O15347 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB3O15347 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB3O15347 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB3O15347 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
HMGB3O15347 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB3O15347 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.35■□□□□ 0.85
HMGB3O15347 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB3O15347 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB3O15347 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB3O15347 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.33■□□□□ 0.85
HMGB3O15347 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.33■□□□□ 0.85
HMGB3O15347 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB3O15347 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB3O15347 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB3O15347 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.33■□□□□ 0.84
HMGB3O15347 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB3O15347 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
HMGB3O15347 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms