Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
TRIM49BA6NDI0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
TRIM49BA6NDI0 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
TRIM49BA6NDI0 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
TRIM49BA6NDI0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.33■■■□□ 2.13
TRIM49BA6NDI0 MIR6090-201ENST00000622481 60 ntBASIC28.33■■■□□ 2.13
TRIM49BA6NDI0 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.33■■■□□ 2.12
TRIM49BA6NDI0 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TRIM49BA6NDI0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TRIM49BA6NDI0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
TRIM49BA6NDI0 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TRIM49BA6NDI0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
TRIM49BA6NDI0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.31■■■□□ 2.12
TRIM49BA6NDI0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
TRIM49BA6NDI0 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
TRIM49BA6NDI0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
TRIM49BA6NDI0 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
TRIM49BA6NDI0 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
TRIM49BA6NDI0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
TRIM49BA6NDI0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.29■■■□□ 2.12
TRIM49BA6NDI0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.29■■■□□ 2.12
TRIM49BA6NDI0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
TRIM49BA6NDI0 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
TRIM49BA6NDI0 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
TRIM49BA6NDI0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
TRIM49BA6NDI0 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.27■■■□□ 2.12
TRIM49BA6NDI0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC28.26■■■□□ 2.11
TRIM49BA6NDI0 AC108673.1-201ENST00000510422 1159 ntBASIC28.25■■■□□ 2.11
TRIM49BA6NDI0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
TRIM49BA6NDI0 MIR3665-201ENST00000578708 105 ntBASIC28.24■■■□□ 2.11
TRIM49BA6NDI0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
TRIM49BA6NDI0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
TRIM49BA6NDI0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
TRIM49BA6NDI0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
TRIM49BA6NDI0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC28.22■■■□□ 2.11
TRIM49BA6NDI0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
TRIM49BA6NDI0 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
TRIM49BA6NDI0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.21■■■□□ 2.11
TRIM49BA6NDI0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
TRIM49BA6NDI0 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
TRIM49BA6NDI0 AC135983.2-203ENST00000454486 1613 ntBASIC28.21■■■□□ 2.11
TRIM49BA6NDI0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 BX255925.1-201ENST00000566954 1854 ntBASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
TRIM49BA6NDI0 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 WHAMMP2-203ENST00000563942 1603 ntBASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 AP006261.1-201ENST00000584783 668 ntBASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
TRIM49BA6NDI0 AL162393.1-201ENST00000437852 946 ntBASIC28.17■■■□□ 2.1
TRIM49BA6NDI0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.17■■■□□ 2.1
TRIM49BA6NDI0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.17■■■□□ 2.1
TRIM49BA6NDI0 AL121749.1-202ENST00000609313 2153 ntBASIC28.17■■■□□ 2.1
TRIM49BA6NDI0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.16■■■□□ 2.1
TRIM49BA6NDI0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
TRIM49BA6NDI0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
TRIM49BA6NDI0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.15■■■□□ 2.1
TRIM49BA6NDI0 AC087741.3-201ENST00000624270 1347 ntBASIC28.15■■■□□ 2.1
TRIM49BA6NDI0 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
TRIM49BA6NDI0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.14■■■□□ 2.1
TRIM49BA6NDI0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.14■■■□□ 2.1
TRIM49BA6NDI0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
TRIM49BA6NDI0 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.13■■■□□ 2.09
TRIM49BA6NDI0 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
TRIM49BA6NDI0 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
TRIM49BA6NDI0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
TRIM49BA6NDI0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
TRIM49BA6NDI0 LINC01003-201ENST00000564834 1764 ntBASIC28.12■■■□□ 2.09
TRIM49BA6NDI0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
TRIM49BA6NDI0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
TRIM49BA6NDI0 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.11■■■□□ 2.09
TRIM49BA6NDI0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.11■■■□□ 2.09
TRIM49BA6NDI0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
TRIM49BA6NDI0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
TRIM49BA6NDI0 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
TRIM49BA6NDI0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
TRIM49BA6NDI0 LINC00273-201ENST00000539813 1452 ntBASIC28.09■■■□□ 2.09
TRIM49BA6NDI0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
TRIM49BA6NDI0 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.09■■■□□ 2.09
TRIM49BA6NDI0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
TRIM49BA6NDI0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.08■■■□□ 2.09
TRIM49BA6NDI0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
TRIM49BA6NDI0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
TRIM49BA6NDI0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
TRIM49BA6NDI0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
TRIM49BA6NDI0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
TRIM49BA6NDI0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
TRIM49BA6NDI0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms