Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC34.45■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC34.45■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC34.45■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.44■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC34.44■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC34.43■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC34.43■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC34.43■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC34.42■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC34.42■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.4■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC34.4■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
SENP3-EIF4A1A0A087X0R7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC34.38■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC34.38■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC34.38■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 DRD5P2-201ENST00000421395 2012 ntBASIC34.37■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.36■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC34.36■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.35■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.34■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC34.33■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC34.33■■■■□ 3.09
SENP3-EIF4A1A0A087X0R7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.32■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC34.32■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 ABHD17AP3-201ENST00000503096 1137 ntBASIC34.31■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC34.29■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC34.29■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC34.29■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC34.29■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC34.27■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC34.27■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 AC100797.4-201ENST00000631653 1827 ntBASIC34.27■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC34.26■■■■□ 3.08
SENP3-EIF4A1A0A087X0R7 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC34.25■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 AC108673.1-201ENST00000510422 1159 ntBASIC34.24■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC34.24■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC34.23■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC34.23■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.23■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC34.22■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC34.22■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC34.21■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC34.2■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC34.2■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC34.2■■■■□ 3.07
SENP3-EIF4A1A0A087X0R7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC34.19■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.18■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC34.18■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.17■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC34.17■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 WHAMMP2-203ENST00000563942 1603 ntBASIC34.15■■■■□ 3.06
SENP3-EIF4A1A0A087X0R7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC34.13■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC34.12■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC34.11■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC34.1■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.09■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC34.08■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms