Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.063e-9■■■■□ 22.1
RPS3P23396 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.353e-9■■■■□ 22.1
RPS3P23396 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.663e-9■■■■□ 22.1
RPS3P23396 YWHAZ-214ENST00000517727 876 ntTSL 310.88□□□□□ -0.673e-9■■■■□ 22.1
RPS3P23396 YWHAZ-212ENST00000480304 2247 ntTSL 210.7□□□□□ -0.73e-9■■■■□ 22.1
RPS3P23396 YWHAZ-216ENST00000521309 1399 ntTSL 2 BASIC10.23□□□□□ -0.773e-9■■■■□ 22.1
RPS3P23396 YWHAZ-202ENST00000395948 812 ntTSL 3 BASIC9.43□□□□□ -0.93e-9■■■■□ 22.1
RPS3P23396 YWHAZ-222ENST00000523848 664 ntTSL 55.34□□□□□ -1.553e-9■■■■□ 22.1
RPS3P23396 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.26□□□□□ -1.573e-9■■■■□ 22.1
RPS3P23396 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.93e-9■■■■□ 22.1
RPS3P23396 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.933e-9■■■■□ 22.1
RPS3P23396 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.86□□□□□ -1.953e-9■■■■□ 22.1
RPS3P23396 YWHAZ-218ENST00000521607 750 ntTSL 32.47□□□□□ -2.013e-9■■■■□ 22.1
RPS3P23396 ARSB-204ENST00000521117 573 ntTSL 323.81■■□□□ 1.48e-7■■■■□ 22.1
RPS3P23396 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.871e-9■■■■□ 22.1
RPS3P23396 IVD-213ENST00000610693 668 ntTSL 217.17■□□□□ 0.341e-9■■■■□ 22.1
RPS3P23396 IVD-203ENST00000479013 4251 ntTSL 1 (best) BASIC11.67□□□□□ -0.541e-9■■■■□ 22.1
RPS3P23396 TMBIM6-207ENST00000547013 428 ntTSL 25.45□□□□□ -1.542e-10■■■■□ 22.1
RPS3P23396 PSMF1-208ENST00000478004 632 ntTSL 211.72□□□□□ -0.535e-10■■■■□ 22.1
RPS3P23396 PSMF1-205ENST00000381899 704 ntTSL 29.8□□□□□ -0.845e-10■■■■□ 22.1
RPS3P23396 SLC16A3-216ENST00000583025 955 ntTSL 218.77■□□□□ 0.62e-12■■■■□ 22
RPS3P23396 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.221e-8■■■■□ 22
RPS3P23396 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.89■□□□□ 0.131e-8■■■■□ 22
RPS3P23396 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.53■□□□□ 0.081e-8■■■■□ 22
RPS3P23396 KDM4B-208ENST00000589104 3470 ntTSL 213.24□□□□□ -0.291e-8■■■■□ 22
RPS3P23396 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.15□□□□□ -1.911e-6■■■■□ 22
RPS3P23396 CP-205ENST00000463556 590 ntTSL 2-0.17□□□□□ -2.441e-7■■■■□ 22
RPS3P23396 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.15■□□□□ 0.662e-7■■■■□ 22
RPS3P23396 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.542e-7■■■■□ 22
RPS3P23396 SF3B3-209ENST00000567635 630 ntTSL 56.69□□□□□ -1.343e-9■■■■□ 22
RPS3P23396 EFHC1-204ENST00000491749 496 ntTSL 424.29■■□□□ 1.483e-6■■■■□ 22
RPS3P23396 POLR2F-206ENST00000443002 1890 ntTSL 221.96■■□□□ 1.111e-6■■■■□ 22
RPS3P23396 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.44■■□□□ 1.021e-6■■■■□ 22
RPS3P23396 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.37■■□□□ 1.011e-6■■■■□ 22
RPS3P23396 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.37■■□□□ 1.011e-6■■■■□ 22
RPS3P23396 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.911e-6■■■■□ 22
RPS3P23396 POLR2F-212ENST00000492213 550 ntTSL 420.73■□□□□ 0.911e-6■■■■□ 22
RPS3P23396 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.59■□□□□ 0.573e-6■■■■□ 22
RPS3P23396 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.1■□□□□ 0.331e-9■■■■□ 22
RPS3P23396 POLR2F-209ENST00000483713 615 ntTSL 315.7■□□□□ 0.11e-6■■■■□ 22
RPS3P23396 EFHC1-235ENST00000637849 2746 ntTSL 515.52■□□□□ 0.083e-6■■■■□ 22
RPS3P23396 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.033e-6■■■■□ 22
RPS3P23396 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.94□□□□□ -0.023e-6■■■■□ 22
RPS3P23396 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.43□□□□□ -0.11e-6■■■■□ 22
RPS3P23396 POLR2F-210ENST00000484894 551 ntTSL 413.72□□□□□ -0.211e-6■■■■□ 22
RPS3P23396 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC12.98□□□□□ -0.331e-6■■■■□ 22
RPS3P23396 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC12.98□□□□□ -0.331e-6■■■■□ 22
RPS3P23396 MLF2-203ENST00000536207 582 ntTSL 312.71□□□□□ -0.372e-7■■■■□ 22
RPS3P23396 HIST1H2BH-201ENST00000619466 2060 ntAPPRIS P1 BASIC12.65□□□□□ -0.382e-7■■■■□ 22
RPS3P23396 MLF2-207ENST00000540710 458 ntTSL 311.86□□□□□ -0.512e-7■■■■□ 22
RPS3P23396 PAQR8-201ENST00000360726 4655 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.793e-6■■■■□ 22
RPS3P23396 SF3B3-211ENST00000568291 1067 ntTSL 29.18□□□□□ -0.942e-22■■■■□ 22
RPS3P23396 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC11.84□□□□□ -0.518e-7■■■■□ 22
RPS3P23396 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.19■□□□□ 0.186e-7■■■■□ 22
RPS3P23396 GANAB-215ENST00000534779 2626 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.596e-9■■■■□ 22
RPS3P23396 GANAB-216ENST00000540933 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.661e-8■■■■□ 22
RPS3P23396 GANAB-201ENST00000346178 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.791e-8■■■■□ 22
RPS3P23396 GANAB-202ENST00000356638 3608 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.871e-8■■■■□ 22
RPS3P23396 GANAB-211ENST00000532402 3718 ntTSL 1 (best)9.39□□□□□ -0.911e-8■■■■□ 22
RPS3P23396 HNRNPM-212ENST00000598999 409 ntTSL 215.39■□□□□ 0.053e-11■■■■□ 22
RPS3P23396 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.82e-10■■■■□ 22
RPS3P23396 GSTP1-205ENST00000494593 1681 ntTSL 219.81■□□□□ 0.762e-10■■■■□ 22
RPS3P23396 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.91□□□□□ -0.182e-10■■■■□ 22
RPS3P23396 DDB1-204ENST00000535147 2789 ntTSL 29.96□□□□□ -0.815e-8■■■■□ 22
RPS3P23396 EIF2S1-206ENST00000557310 999 ntTSL 212.53□□□□□ -0.44e-7■■■■□ 22
RPS3P23396 EIF2S1-204ENST00000555876 783 ntTSL 24.84□□□□□ -1.634e-7■■■■□ 22
RPS3P23396 TF-209ENST00000475382 586 ntTSL 49.13□□□□□ -0.951e-26■■■■□ 22
RPS3P23396 TF-214ENST00000498622 719 ntTSL 27.77□□□□□ -1.171e-26■■■■□ 22
RPS3P23396 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.15■□□□□ 0.52e-7■■■■□ 22
RPS3P23396 TM2D2-208ENST00000522142 885 ntTSL 316.98■□□□□ 0.312e-7■■■■□ 22
RPS3P23396 TM2D2-204ENST00000517872 570 ntTSL 215.88■□□□□ 0.132e-7■■■■□ 22
RPS3P23396 TM2D2-209ENST00000522434 469 ntTSL 215.88■□□□□ 0.132e-7■■■■□ 22
RPS3P23396 TM2D2-202ENST00000456397 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.632e-7■■■■□ 22
RPS3P23396 TM2D2-203ENST00000456845 3295 ntTSL 1 (best) BASIC7.95□□□□□ -1.142e-7■■■■□ 22
RPS3P23396 TM2D2-206ENST00000520152 549 ntTSL 46.98□□□□□ -1.292e-7■■■■□ 22
RPS3P23396 TM2D2-205ENST00000519186 573 ntTSL 26.38□□□□□ -1.392e-7■■■■□ 22
RPS3P23396 G6PD-209ENST00000490651 783 ntTSL 217.85■□□□□ 0.453e-10■■■■□ 22
RPS3P23396 DDB1-209ENST00000537877 1375 ntTSL 212.26□□□□□ -0.454e-7■■■■□ 22
RPS3P23396 BUD23-207ENST00000430446 738 ntTSL 312.43□□□□□ -0.421e-6■■■■□ 22
RPS3P23396 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC10.41□□□□□ -0.741e-6■■■■□ 22
RPS3P23396 CTSB-214ENST00000527243 580 ntTSL 410.95□□□□□ -0.662e-9■■■■□ 22
RPS3P23396 CLEC3B-203ENST00000490386 708 ntTSL 327.9■■■□□ 2.062e-8■■■■□ 22
RPS3P23396 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.162e-8■■■■□ 22
RPS3P23396 TBL3-203ENST00000564171 917 ntTSL 220.9■□□□□ 0.942e-8■■■■□ 22
RPS3P23396 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.552e-8■■■■□ 22
RPS3P23396 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.482e-8■■■■□ 22
RPS3P23396 KDM5C-201ENST00000349663 548 ntTSL 417.5■□□□□ 0.392e-8■■■■□ 22
RPS3P23396 KDM5C-207ENST00000429877 870 ntTSL 316.89■□□□□ 0.292e-8■■■■□ 22
RPS3P23396 DNAAF5-205ENST00000440747 2350 ntAPPRIS ALT2 TSL 216.81■□□□□ 0.282e-8■■■■□ 22
RPS3P23396 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.272e-8■■■■□ 22
RPS3P23396 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.252e-8■■■■□ 22
RPS3P23396 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.172e-8■■■■□ 22
RPS3P23396 SH2D2A-204ENST00000468744 699 ntTSL 215.43■□□□□ 0.062e-8■■■■□ 22
RPS3P23396 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.052e-8■■■■□ 22
RPS3P23396 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.042e-8■■■■□ 22
RPS3P23396 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.022e-8■■■■□ 22
RPS3P23396 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.35□□□□□ -0.112e-8■■■■□ 22
RPS3P23396 TBL3-207ENST00000569792 856 ntTSL 514.24□□□□□ -0.132e-8■■■■□ 22
RPS3P23396 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.162e-8■■■■□ 22
RPS3P23396 KDM5C-206ENST00000428012 766 ntTSL 313.24□□□□□ -0.292e-8■■■■□ 22
Retrieved 100 of 24,271 protein–RNA pairs in 296 ms