Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL137784.2-201ENST00000607332 1000 ntBASIC16.61■□□□□ 0.25
SDCBPO00560 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.61■□□□□ 0.25
SDCBPO00560 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.6■□□□□ 0.25
SDCBPO00560 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SDCBPO00560 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SDCBPO00560 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SDCBPO00560 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.6■□□□□ 0.25
SDCBPO00560 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 KRT18P68-201ENST00000392293 1000 ntBASIC16.6■□□□□ 0.25
SDCBPO00560 AC004911.1-201ENST00000416316 871 ntBASIC16.6■□□□□ 0.25
SDCBPO00560 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.6■□□□□ 0.25
SDCBPO00560 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.6■□□□□ 0.25
SDCBPO00560 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.6■□□□□ 0.25
SDCBPO00560 IKBKGP1-201ENST00000612193 1073 ntBASIC16.6■□□□□ 0.25
SDCBPO00560 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.6■□□□□ 0.25
SDCBPO00560 OR10C1-204ENST00000622521 1039 ntBASIC16.6■□□□□ 0.25
SDCBPO00560 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
SDCBPO00560 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.6■□□□□ 0.25
SDCBPO00560 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.6■□□□□ 0.25
SDCBPO00560 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDCBPO00560 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.59■□□□□ 0.25
SDCBPO00560 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SDCBPO00560 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
SDCBPO00560 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
SDCBPO00560 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.59■□□□□ 0.25
SDCBPO00560 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.59■□□□□ 0.25
SDCBPO00560 AC080038.1-201ENST00000611274 1154 ntBASIC16.59■□□□□ 0.25
SDCBPO00560 AC105020.6-201ENST00000621523 1217 ntBASIC16.59■□□□□ 0.25
SDCBPO00560 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDCBPO00560 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.59■□□□□ 0.25
SDCBPO00560 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SDCBPO00560 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SDCBPO00560 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SDCBPO00560 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.58■□□□□ 0.25
SDCBPO00560 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.58■□□□□ 0.24
SDCBPO00560 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.58■□□□□ 0.24
SDCBPO00560 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
SDCBPO00560 CYP2T3P-201ENST00000601990 817 ntBASIC16.58■□□□□ 0.24
SDCBPO00560 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.58■□□□□ 0.24
SDCBPO00560 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.58■□□□□ 0.24
SDCBPO00560 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.58■□□□□ 0.24
SDCBPO00560 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDCBPO00560 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms