Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.08■□□□□ 06e-6■■□□□ 12.1
LSM11P83369 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.82□□□□□ -0.046e-6■■□□□ 12.1
LSM11P83369 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.046e-6■■□□□ 12.1
LSM11P83369 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.73□□□□□ -0.056e-6■■□□□ 12.1
LSM11P83369 EIF2B4-202ENST00000405940 1570 ntTSL 1 (best)14.36□□□□□ -0.116e-6■■□□□ 12.1
LSM11P83369 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.136e-6■■□□□ 12.1
LSM11P83369 AKR1A1-209ENST00000481885 516 ntTSL 314.12□□□□□ -0.156e-6■■□□□ 12.1
LSM11P83369 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.166e-6■■□□□ 12.1
LSM11P83369 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.196e-6■■□□□ 12.1
LSM11P83369 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.89□□□□□ -0.196e-6■■□□□ 12.1
LSM11P83369 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.216e-6■■□□□ 12.1
LSM11P83369 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.46□□□□□ -0.256e-6■■□□□ 12.1
LSM11P83369 AKR1A1-205ENST00000473038 948 ntTSL 213.2□□□□□ -0.36e-6■■□□□ 12.1
LSM11P83369 PKMYT1-212ENST00000574333 479 ntTSL 312.53□□□□□ -0.46e-6■■□□□ 12.1
LSM11P83369 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.416e-6■■□□□ 12.1
LSM11P83369 CDCA7-207ENST00000468359 906 ntTSL 312.35□□□□□ -0.436e-6■■□□□ 12.1
LSM11P83369 AKR1A1-203ENST00000434299 840 ntTSL 212.12□□□□□ -0.476e-6■■□□□ 12.1
LSM11P83369 PSMB6-202ENST00000571309 583 ntTSL 311.98□□□□□ -0.496e-6■■□□□ 12.1
LSM11P83369 PSMB6-203ENST00000575079 583 ntTSL 211.94□□□□□ -0.56e-6■■□□□ 12.1
LSM11P83369 PKMYT1-217ENST00000575040 605 ntTSL 311.72□□□□□ -0.536e-6■■□□□ 12.1
LSM11P83369 PKMYT1-215ENST00000574680 717 ntTSL 211.65□□□□□ -0.546e-6■■□□□ 12.1
LSM11P83369 CDCA7-205ENST00000435616 928 ntTSL 311.42□□□□□ -0.586e-6■■□□□ 12.1
LSM11P83369 CDCA7-208ENST00000496441 2943 ntTSL 210.98□□□□□ -0.656e-6■■□□□ 12.1
LSM11P83369 AKR1A1-213ENST00000497973 667 ntTSL 210.78□□□□□ -0.686e-6■■□□□ 12.1
LSM11P83369 CDCA7-204ENST00000410101 1369 ntTSL 2 BASIC10.12□□□□□ -0.796e-6■■□□□ 12.1
LSM11P83369 RASSF4-201ENST00000340258 3641 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.896e-6■■□□□ 12.1
LSM11P83369 CDCA7-206ENST00000467411 3176 ntTSL 1 (best)9.4□□□□□ -0.96e-6■■□□□ 12.1
LSM11P83369 CDCA7-201ENST00000306721 2789 ntTSL 2 BASIC8.98□□□□□ -0.976e-6■■□□□ 12.1
LSM11P83369 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.217e-7■■□□□ 12.1
LSM11P83369 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC11.66□□□□□ -0.543e-10■■□□□ 12.1
LSM11P83369 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.16e-7■■□□□ 12.1
LSM11P83369 NINL-205ENST00000464285 1514 ntTSL 213.73□□□□□ -0.216e-7■■□□□ 12.1
LSM11P83369 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.346e-7■■□□□ 12.1
LSM11P83369 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.423e-13■■□□□ 12.1
LSM11P83369 SAT1-205ENST00000462639 826 ntTSL 210.86□□□□□ -0.673e-13■■□□□ 12.1
LSM11P83369 SAT1-209ENST00000489394 1135 ntTSL 210.86□□□□□ -0.673e-13■■□□□ 12.1
LSM11P83369 MRPS6-202ENST00000477091 1061 ntTSL 515.34■□□□□ 0.055e-7■■□□□ 12.1
LSM11P83369 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.225e-7■■□□□ 12.1
LSM11P83369 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.29□□□□□ -0.285e-7■■□□□ 12.1
LSM11P83369 MRPS6-205ENST00000488492 909 ntTSL 512.9□□□□□ -0.345e-7■■□□□ 12.1
LSM11P83369 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.935e-7■■□□□ 12.1
LSM11P83369 SBF1-205ENST00000470434 2139 ntTSL 517.89■□□□□ 0.452e-6■■□□□ 12.1
LSM11P83369 SBF1-204ENST00000418590 1578 ntTSL 1 (best)14.63□□□□□ -0.072e-6■■□□□ 12.1
LSM11P83369 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.222e-6■■□□□ 12.1
LSM11P83369 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.382e-6■■□□□ 12.1
LSM11P83369 ARAP1-216ENST00000542596 699 ntTSL 512.93□□□□□ -0.343e-6■■□□□ 12.1
LSM11P83369 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.793e-6■■□□□ 12.1
LSM11P83369 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.873e-6■■□□□ 12.1
LSM11P83369 SARAF-210ENST00000522055 582 ntTSL 318.38■□□□□ 0.531e-8■■□□□ 12.1
LSM11P83369 SARAF-203ENST00000518174 1981 ntTSL 517.38■□□□□ 0.371e-8■■□□□ 12.1
LSM11P83369 SARAF-202ENST00000517569 487 ntTSL 1 (best)17.03■□□□□ 0.321e-8■■□□□ 12.1
LSM11P83369 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.88■□□□□ 0.291e-8■■□□□ 12.1
LSM11P83369 SARAF-206ENST00000520303 1803 ntTSL 1 (best)16.5■□□□□ 0.231e-8■■□□□ 12.1
LSM11P83369 SARAF-207ENST00000521083 419 ntTSL 216.23■□□□□ 0.191e-8■■□□□ 12.1
LSM11P83369 SARAF-205ENST00000518340 582 ntTSL 316.02■□□□□ 0.161e-8■■□□□ 12.1
LSM11P83369 SARAF-213ENST00000523761 566 ntTSL 416.02■□□□□ 0.161e-8■■□□□ 12.1
LSM11P83369 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-8■■□□□ 12.1
LSM11P83369 SARAF-208ENST00000521265 1741 ntTSL 511.6□□□□□ -0.551e-8■■□□□ 12.1
LSM11P83369 NRBP2-203ENST00000527545 2546 ntTSL 218.77■□□□□ 0.62e-8■■□□□ 12.1
LSM11P83369 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.242e-8■■□□□ 12.1
LSM11P83369 NRBP2-209ENST00000533093 3877 ntTSL 1 (best)16.06■□□□□ 0.162e-8■■□□□ 12.1
LSM11P83369 NRBP2-204ENST00000529747 3693 ntTSL 215.83■□□□□ 0.122e-8■■□□□ 12.1
LSM11P83369 NRBP2-201ENST00000423469 2905 ntTSL 1 (best)15.13■□□□□ 0.012e-8■■□□□ 12.1
LSM11P83369 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.53■■□□□ 1.041e-11■■□□□ 12.1
LSM11P83369 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.791e-11■■□□□ 12.1
LSM11P83369 AP1G2-224ENST00000556741 353 ntTSL 210.6□□□□□ -0.714e-12■■□□□ 12
LSM11P83369 AP1G2-219ENST00000555789 318 ntTSL 38.45□□□□□ -1.064e-12■■□□□ 12
LSM11P83369 AP1G2-221ENST00000555974 349 ntTSL 37.29□□□□□ -1.244e-12■■□□□ 12
LSM11P83369 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.011e-7■■□□□ 12
LSM11P83369 PSMD13-211ENST00000532025 653 ntTSL 314.86□□□□□ -0.031e-7■■□□□ 12
LSM11P83369 PSMD13-202ENST00000382671 1489 ntTSL 1 (best)13.83□□□□□ -0.21e-7■■□□□ 12
LSM11P83369 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.83□□□□□ -0.21e-7■■□□□ 12
LSM11P83369 PSMD13-204ENST00000525665 1632 ntTSL 513.71□□□□□ -0.221e-7■■□□□ 12
LSM11P83369 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.67□□□□□ -0.221e-7■■□□□ 12
LSM11P83369 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC10.76□□□□□ -0.691e-7■■□□□ 12
LSM11P83369 PSMD13-207ENST00000527982 2200 nt10.7□□□□□ -0.71e-7■■□□□ 12
LSM11P83369 PSMD13-205ENST00000526783 892 ntTSL 59.29□□□□□ -0.921e-7■■□□□ 12
LSM11P83369 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.01■■□□□ 1.432e-8■■□□□ 12
LSM11P83369 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.1■■□□□ 1.292e-8■■□□□ 12
LSM11P83369 ZFAND2B-214ENST00000464902 1851 ntTSL 221.28■■□□□ 12e-8■■□□□ 12
LSM11P83369 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.922e-8■■□□□ 12
LSM11P83369 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.05■□□□□ 0.642e-8■■□□□ 12
LSM11P83369 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.082e-8■■□□□ 12
LSM11P83369 ZFAND2B-210ENST00000425849 484 ntTSL 311.69□□□□□ -0.542e-8■■□□□ 12
LSM11P83369 EWSR1-218ENST00000483629 1818 ntTSL 516.98■□□□□ 0.313e-8■■□□□ 12
LSM11P83369 EWSR1-205ENST00000360091 1289 ntTSL 516.94■□□□□ 0.33e-8■■□□□ 12
LSM11P83369 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.213e-8■■□□□ 12
LSM11P83369 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.21■□□□□ 0.193e-8■■□□□ 12
LSM11P83369 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.96■□□□□ 0.153e-8■■□□□ 12
LSM11P83369 EWSR1-215ENST00000469669 2630 ntTSL 215.85■□□□□ 0.133e-8■■□□□ 12
LSM11P83369 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.38■□□□□ 0.053e-8■■□□□ 12
LSM11P83369 EWSR1-216ENST00000479135 7285 ntTSL 1 (best)10.2□□□□□ -0.783e-8■■□□□ 12
LSM11P83369 SLC13A5-209ENST00000574580 5398 nt8.67□□□□□ -1.023e-15■■□□□ 12
LSM11P83369 CAPRIN2-205ENST00000454014 4398 ntTSL 1 (best)11.29□□□□□ -0.62e-6■■□□□ 12
LSM11P83369 CAPRIN2-201ENST00000298892 4334 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.662e-6■■□□□ 12
LSM11P83369 CAPRIN2-204ENST00000433722 3012 ntTSL 1 (best)6.58□□□□□ -1.362e-6■■□□□ 12
LSM11P83369 CAPRIN2-208ENST00000537553 6543 ntTSL 26.24□□□□□ -1.412e-6■■□□□ 12
LSM11P83369 CAPRIN2-216ENST00000548676 3221 ntTSL 1 (best)5.95□□□□□ -1.462e-6■■□□□ 12
LSM11P83369 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.71□□□□□ -1.52e-6■■□□□ 12
LSM11P83369 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30■■■□□ 2.392e-8■■□□□ 12
Retrieved 100 of 11,495 protein–RNA pairs in 133.7 ms