Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RPTOR-209ENST00000575542 5536 ntTSL 1 (best)15.5■□□□□ 0.072e-7■■■■□ 22.4
UPF1Q92900 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.12■□□□□ 0.012e-7■■■■□ 22.4
UPF1Q92900 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.012e-7■■■■□ 22.4
UPF1Q92900 AKT1S1-202ENST00000391830 623 ntTSL 232.02■■■□□ 2.724e-6■■■■□ 22.4
UPF1Q92900 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.29■□□□□ 0.363e-6■■■■□ 22.4
UPF1Q92900 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.023e-12■■■■□ 22.4
UPF1Q92900 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.211e-6■■■■□ 22.4
UPF1Q92900 MGME1-204ENST00000463219 571 ntTSL 312.49□□□□□ -0.412e-11■■■■□ 22.4
UPF1Q92900 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.442e-6■■■■□ 22.4
UPF1Q92900 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.262e-6■■■■□ 22.4
UPF1Q92900 IQSEC2-215ENST00000640005 1323 ntTSL 416.22■□□□□ 0.192e-6■■■■□ 22.4
UPF1Q92900 IQSEC2-214ENST00000639796 2351 ntTSL 313.21□□□□□ -0.292e-6■■■■□ 22.4
UPF1Q92900 IQSEC2-206ENST00000638521 4501 ntAPPRIS ALT2 TSL 512.14□□□□□ -0.472e-6■■■■□ 22.4
UPF1Q92900 IQSEC2-209ENST00000638869 3000 ntTSL 510.24□□□□□ -0.772e-6■■■■□ 22.4
UPF1Q92900 DHCR7-203ENST00000525137 996 ntTSL 321.77■■□□□ 1.084e-17■■■■□ 22.4
UPF1Q92900 SMG5-204ENST00000476954 1161 ntTSL 225.04■■□□□ 1.63e-10■■■■□ 22.4
UPF1Q92900 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.314e-7■■■■□ 22.4
UPF1Q92900 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC15.15■□□□□ 0.024e-7■■■■□ 22.4
UPF1Q92900 MAP2K3-208ENST00000496046 2089 ntTSL 514.77□□□□□ -0.054e-7■■■■□ 22.4
UPF1Q92900 MAP2K3-204ENST00000395491 2401 ntTSL 213.59□□□□□ -0.234e-7■■■■□ 22.4
UPF1Q92900 CDIP1-203ENST00000562579 577 ntTSL 518.29■□□□□ 0.525e-19■■■■□ 22.4
UPF1Q92900 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC36.36■■■■□ 3.415e-7■■■■□ 22.4
UPF1Q92900 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.785e-7■■■■□ 22.4
UPF1Q92900 SLC35D2-205ENST00000490599 715 ntTSL 223.46■■□□□ 1.355e-7■■■■□ 22.4
UPF1Q92900 IGF2R-203ENST00000475584 597 ntTSL 321.24■□□□□ 0.996e-9■■■■□ 22.4
UPF1Q92900 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.326e-9■■■■□ 22.4
UPF1Q92900 CTDSP1-206ENST00000464255 926 ntTSL 518.96■□□□□ 0.631e-6■■■■□ 22.4
UPF1Q92900 SH3GLB2-211ENST00000479237 2794 ntTSL 1 (best)15.97■□□□□ 0.159e-16■■■■□ 22.4
UPF1Q92900 SH3GLB2-209ENST00000461811 4828 ntTSL 1 (best)13.43□□□□□ -0.269e-16■■■■□ 22.4
UPF1Q92900 MGAT4B-209ENST00000519836 1686 ntTSL 1 (best)26.07■■□□□ 1.762e-7■■■■□ 22.4
UPF1Q92900 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.082e-7■■■■□ 22.4
UPF1Q92900 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.24■□□□□ 0.192e-7■■■■□ 22.4
UPF1Q92900 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.242e-6■■■■□ 22.4
UPF1Q92900 CLPB-201ENST00000294053 3240 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.382e-6■■■■□ 22.4
UPF1Q92900 CLPB-203ENST00000437826 3379 ntTSL 2 BASIC12.35□□□□□ -0.432e-6■■■■□ 22.4
UPF1Q92900 USP40-214ENST00000483519 2722 ntTSL 1 (best)14.77□□□□□ -0.053e-6■■■■□ 22.4
UPF1Q92900 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.313e-6■■■■□ 22.4
UPF1Q92900 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.363e-6■■■■□ 22.4
UPF1Q92900 SLC19A3-201ENST00000258403 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.631e-6■■■■□ 22.3
UPF1Q92900 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC9.46□□□□□ -0.91e-6■■■■□ 22.3
UPF1Q92900 SLC19A3-205ENST00000425817 3517 ntTSL 1 (best)9.09□□□□□ -0.951e-6■■■■□ 22.3
UPF1Q92900 ESRRB-206ENST00000512784 1826 ntTSL 519.04■□□□□ 0.643e-8■■■■□ 22.3
UPF1Q92900 ESRRB-202ENST00000505752 2432 ntTSL 1 (best)13.99□□□□□ -0.173e-8■■■■□ 22.3
UPF1Q92900 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.796e-7■■■■□ 22.3
UPF1Q92900 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.446e-7■■■■□ 22.3
UPF1Q92900 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.436e-7■■■■□ 22.3
UPF1Q92900 C19orf47-208ENST00000582783 3628 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.31e-6■■■■□ 22.3
UPF1Q92900 NAA40-201ENST00000338447 4707 ntTSL 1 (best)12□□□□□ -0.492e-6■■■■□ 22.3
UPF1Q92900 NAA40-202ENST00000377793 3664 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.992e-6■■■■□ 22.3
UPF1Q92900 PTPA-208ENST00000411917 738 ntTSL 325.55■■□□□ 1.684e-15■■■■□ 22.3
UPF1Q92900 PTPA-225ENST00000455240 645 ntTSL 324.16■■□□□ 1.464e-15■■■■□ 22.3
UPF1Q92900 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.56e-15■■■■□ 22.3
UPF1Q92900 SF1-211ENST00000448404 2778 ntTSL 1 (best)15.62■□□□□ 0.096e-15■■■■□ 22.3
UPF1Q92900 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.23□□□□□ -0.136e-15■■■■□ 22.3
UPF1Q92900 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.226e-15■■■■□ 22.3
UPF1Q92900 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.46□□□□□ -0.256e-15■■■■□ 22.3
UPF1Q92900 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.466e-15■■■■□ 22.3
UPF1Q92900 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC25.46■■□□□ 1.671e-6■■■■□ 22.3
UPF1Q92900 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC12.45□□□□□ -0.429e-7■■■■□ 22.3
UPF1Q92900 ERBB2-206ENST00000578373 4523 ntTSL 1 (best)11.88□□□□□ -0.519e-7■■■■□ 22.3
UPF1Q92900 ERBB2-201ENST00000269571 4545 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.519e-7■■■■□ 22.3
UPF1Q92900 ERBB2-204ENST00000541774 4341 ntTSL 5 BASIC10.77□□□□□ -0.699e-7■■■■□ 22.3
UPF1Q92900 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.91■□□□□ 0.783e-8■■■■□ 22.3
UPF1Q92900 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.37■□□□□ 0.856e-7■■■■□ 22.3
UPF1Q92900 MPHOSPH8-201ENST00000361479 4235 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.72e-7■■■■□ 22.3
UPF1Q92900 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.27■□□□□ 0.847e-10■■■■□ 22.3
UPF1Q92900 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC16.59■□□□□ 0.257e-10■■■■□ 22.3
UPF1Q92900 GATA2-204ENST00000489987 1433 ntTSL 227.56■■■□□ 21e-9■■■■□ 22.3
UPF1Q92900 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.96■□□□□ 0.951e-9■■■■□ 22.3
UPF1Q92900 ENC1-204ENST00000509284 571 ntTSL 414.56□□□□□ -0.082e-7■■■■□ 22.3
UPF1Q92900 NAP1L4-207ENST00000469805 2294 ntTSL 318.85■□□□□ 0.613e-18■■■■□ 22.3
UPF1Q92900 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.29■□□□□ 0.363e-18■■■■□ 22.3
UPF1Q92900 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.163e-18■■■■□ 22.3
UPF1Q92900 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.313e-9■■■■□ 22.2
UPF1Q92900 RNASEK-208ENST00000570898 425 ntTSL 3 BASIC11.86□□□□□ -0.512e-16■■■■□ 22.2
UPF1Q92900 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.271e-7■■■■□ 22.2
UPF1Q92900 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.548e-8■■■■□ 22.2
UPF1Q92900 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.888e-8■■■■□ 22.2
UPF1Q92900 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.22■□□□□ 0.514e-7■■■■□ 22.2
UPF1Q92900 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.454e-7■■■■□ 22.2
UPF1Q92900 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.388e-7■■■■□ 22.2
UPF1Q92900 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.568e-7■■■■□ 22.2
UPF1Q92900 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.981e-7■■■■□ 22.2
UPF1Q92900 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.121e-7■■■■□ 22.2
UPF1Q92900 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.281e-7■■■■□ 22.2
UPF1Q92900 TGIF2-208ENST00000611732 3344 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.811e-7■■■■□ 22.2
UPF1Q92900 THRA-208ENST00000578218 907 ntTSL 437.16■■■■□ 3.542e-6■■■■□ 22.2
UPF1Q92900 THRA-206ENST00000577486 563 ntTSL 436.18■■■■□ 3.382e-6■■■■□ 22.2
UPF1Q92900 THRA-210ENST00000585047 574 ntTSL 435.21■■■■□ 3.232e-6■■■■□ 22.2
UPF1Q92900 THRA-205ENST00000577288 581 ntTSL 435.21■■■■□ 3.232e-6■■■■□ 22.2
UPF1Q92900 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.282e-6■■■■□ 22.2
UPF1Q92900 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.128e-7■■■■□ 22.2
UPF1Q92900 PTGS1-206ENST00000614910 4894 ntTSL 3 BASIC10.71□□□□□ -0.694e-7■■■■□ 22.2
UPF1Q92900 PTGS1-202ENST00000362012 4964 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.734e-7■■■■□ 22.2
UPF1Q92900 PTGS1-207ENST00000619306 5051 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.84e-7■■■■□ 22.2
UPF1Q92900 PTGS1-205ENST00000540753 5375 ntTSL 2 BASIC9.98□□□□□ -0.814e-7■■■■□ 22.2
UPF1Q92900 PTGS1-203ENST00000373698 4987 ntTSL 2 BASIC9.53□□□□□ -0.884e-7■■■■□ 22.2
UPF1Q92900 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.251e-10■■■■□ 22.2
UPF1Q92900 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC7.81□□□□□ -1.162e-7■■■■□ 22.2
UPF1Q92900 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC7.25□□□□□ -1.252e-7■■■■□ 22.2
Retrieved 100 of 15,879 protein–RNA pairs in 146.3 ms