RNA–Protein interactions for RNA: ENST00000332118.10

SRPRA-201, Transcript of SRP receptor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRPRA, Length 3,069 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPRA-201ENST00000332118 NISCHQ9Y2I1 1504 aa30.49■■■□□ 2.47
SRPRA-201ENST00000332118 CCDC180Q9P1Z9 1646 aa26.59■■□□□ 1.85
SRPRA-201ENST00000332118 ZCCHC6Q5VYS8 1495 aaKnown RBP25.78■■□□□ 1.72
SRPRA-201ENST00000332118 DCAF1Q9Y4B6 1507 aa25.44■■□□□ 1.66
SRPRA-201ENST00000332118 MYO15BQ96JP2 1530 aa25■■□□□ 1.59
SRPRA-201ENST00000332118 SHROOM4Q9ULL8 1493 aa24.65■■□□□ 1.54
SRPRA-201ENST00000332118 NACADO15069 1562 aa24.53■■□□□ 1.52
SRPRA-201ENST00000332118 DCAF8L2P0C7V8 631 aa24.28■■□□□ 1.48
SRPRA-201ENST00000332118 ABCC9O60706 1549 aa24.24■■□□□ 1.47
SRPRA-201ENST00000332118 SCRIBQ14160 1630 aa24.17■■□□□ 1.46
SRPRA-201ENST00000332118 RB1CC1Q8TDY2 1594 aa24.14■■□□□ 1.45
SRPRA-201ENST00000332118 SUPT5HO00267 1087 aaKnown RBP23.87■■□□□ 1.41
SRPRA-201ENST00000332118 UNC13AQ9UPW8 1703 aa23.82■■□□□ 1.4
SRPRA-201ENST00000332118 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
SRPRA-201ENST00000332118 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
SRPRA-201ENST00000332118 BAZ1AQ9NRL2 1556 aaPredicted RBP23.51■■□□□ 1.35
SRPRA-201ENST00000332118 MROH2BQ7Z745 1585 aa23.5■■□□□ 1.35
SRPRA-201ENST00000332118 BICRAQ9NZM4 1560 aa23.49■■□□□ 1.35
SRPRA-201ENST00000332118 SMARCA4P51532 1647 aa23.37■■□□□ 1.33
SRPRA-201ENST00000332118 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
SRPRA-201ENST00000332118 WIZO95785 1651 aa23.34■■□□□ 1.33
SRPRA-201ENST00000332118 PEG3Q9GZU2 1588 aa23.25■■□□□ 1.31
SRPRA-201ENST00000332118 TOP2AP11388 1531 aaKnown RBP23.21■■□□□ 1.31
SRPRA-201ENST00000332118 EIF4G1Q04637 1599 aaKnown RBP23.19■■□□□ 1.3
SRPRA-201ENST00000332118 SMARCA2P51531 1590 aa22.99■■□□□ 1.27
SRPRA-201ENST00000332118 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
SRPRA-201ENST00000332118 ATAD2BQ9ULI0 1458 aa22.79■■□□□ 1.24
SRPRA-201ENST00000332118 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
SRPRA-201ENST00000332118 HMGXB3Q12766 1538 aa22.69■■□□□ 1.22
SRPRA-201ENST00000332118 BAZ1BQ9UIG0 1483 aaKnown RBP22.61■■□□□ 1.21
SRPRA-201ENST00000332118 NCAPD3P42695 1498 aa22.58■■□□□ 1.21
SRPRA-201ENST00000332118 TRIM41Q8WV44 630 aa22.55■■□□□ 1.2
SRPRA-201ENST00000332118 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
SRPRA-201ENST00000332118 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
SRPRA-201ENST00000332118 EEA1Q15075 1411 aa22.31■■□□□ 1.16
SRPRA-201ENST00000332118 LOC105371045A0A1W2PR82 267 aa22.3■■□□□ 1.16
SRPRA-201ENST00000332118 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
SRPRA-201ENST00000332118 SYNJ1O43426 1573 aa22.27■■□□□ 1.16
SRPRA-201ENST00000332118 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.15
SRPRA-201ENST00000332118 TOP2BQ02880 1626 aa22.23■■□□□ 1.15
SRPRA-201ENST00000332118 CFTRP13569 1480 aa22.2■■□□□ 1.14
SRPRA-201ENST00000332118 CC2D2AQ9P2K1 1620 aa22.16■■□□□ 1.14
SRPRA-201ENST00000332118 KIF21BO75037 1637 aa22.09■■□□□ 1.13
SRPRA-201ENST00000332118 SOGA1O94964 1423 aa22.08■■□□□ 1.12
SRPRA-201ENST00000332118 RUSC2Q8N2Y8 1516 aa21.98■■□□□ 1.11
SRPRA-201ENST00000332118 CUX1P39880 1505 aa21.97■■□□□ 1.11
SRPRA-201ENST00000332118 TNIKQ9UKE5 1360 aa21.96■■□□□ 1.11
SRPRA-201ENST00000332118 GOLGA3Q08378 1498 aa21.93■■□□□ 1.1
SRPRA-201ENST00000332118 FAM9AQ8IZU1 332 aaPredicted RBP21.93■■□□□ 1.1
SRPRA-201ENST00000332118 CADPSQ9ULU8 1353 aa21.9■■□□□ 1.1
SRPRA-201ENST00000332118 CEP164Q9UPV0 1460 aa21.9■■□□□ 1.1
SRPRA-201ENST00000332118 CSRNP3Q8WYN3 585 aa21.88■■□□□ 1.09
SRPRA-201ENST00000332118 ERICH3Q5RHP9 1530 aa21.85■■□□□ 1.09
SRPRA-201ENST00000332118 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
SRPRA-201ENST00000332118 TRIM26Q12899 539 aaPredicted RBP21.79■■□□□ 1.08
SRPRA-201ENST00000332118 LAMC3Q9Y6N6 1575 aa21.77■■□□□ 1.08
SRPRA-201ENST00000332118 PRXQ9BXM0 1461 aa21.77■■□□□ 1.07
SRPRA-201ENST00000332118 PCGF6Q9BYE7 350 aa21.69■■□□□ 1.06
SRPRA-201ENST00000332118 DNMBPQ6XZF7 1577 aa21.69■■□□□ 1.06
SRPRA-201ENST00000332118 FANCD2Q9BXW9 1451 aa21.66■■□□□ 1.06
SRPRA-201ENST00000332118 HRCP23327 699 aa21.66■■□□□ 1.06
SRPRA-201ENST00000332118 RAPGEF2Q9Y4G8 1499 aa21.66■■□□□ 1.06
SRPRA-201ENST00000332118 KIF27Q86VH2 1401 aa21.65■■□□□ 1.06
SRPRA-201ENST00000332118 WDR97A6NE52 1622 aa21.6■■□□□ 1.05
SRPRA-201ENST00000332118 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
SRPRA-201ENST00000332118 TOPBP1Q92547 1522 aa21.53■■□□□ 1.04
SRPRA-201ENST00000332118 ABCA10Q8WWZ4 1543 aa21.53■■□□□ 1.04
SRPRA-201ENST00000332118 NESP48681 1621 aa21.49■■□□□ 1.03
SRPRA-201ENST00000332118 CLIP1P30622 1438 aa21.49■■□□□ 1.03
SRPRA-201ENST00000332118 VPS8Q8N3P4 1428 aa21.47■■□□□ 1.03
SRPRA-201ENST00000332118 POLA1P09884 1462 aaPredicted RBP21.45■■□□□ 1.02
SRPRA-201ENST00000332118 CUX2O14529 1486 aa21.44■■□□□ 1.02
SRPRA-201ENST00000332118 IGF1RP08069 1367 aa21.43■■□□□ 1.02
SRPRA-201ENST00000332118 URB2Q14146 1524 aaKnown RBP21.43■■□□□ 1.02
SRPRA-201ENST00000332118 CUL7Q14999 1698 aa21.43■■□□□ 1.02
SRPRA-201ENST00000332118 KIF21AQ7Z4S6 1674 aa21.43■■□□□ 1.02
SRPRA-201ENST00000332118 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
SRPRA-201ENST00000332118 EHMT2Q96KQ7 1210 aa21.41■■□□□ 1.02
SRPRA-201ENST00000332118 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
SRPRA-201ENST00000332118 ABCA5Q8WWZ7 1642 aa21.4■■□□□ 1.02
SRPRA-201ENST00000332118 ARAP1Q96P48 1450 aa21.38■■□□□ 1.01
SRPRA-201ENST00000332118 TARBP1Q13395 1621 aaKnown RBP21.31■■□□□ 1
SRPRA-201ENST00000332118 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
SRPRA-201ENST00000332118 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
SRPRA-201ENST00000332118 CTTNBP2Q8WZ74 1663 aa21.26■□□□□ 0.99
SRPRA-201ENST00000332118 CARMIL1Q5VZK9 1371 aa21.26■□□□□ 0.99
SRPRA-201ENST00000332118 MAP3K1Q13233 1512 aa21.24■□□□□ 0.99
SRPRA-201ENST00000332118 ZEB1P37275 1124 aaPredicted RBP21.19■□□□□ 0.98
SRPRA-201ENST00000332118 EFCAB5A4FU69 1503 aa21.18■□□□□ 0.98
SRPRA-201ENST00000332118 WDR62O43379 1518 aa21.18■□□□□ 0.98
SRPRA-201ENST00000332118 MRC2Q9UBG0 1479 aa21.18■□□□□ 0.98
SRPRA-201ENST00000332118 DNAJC5BQ9UF47 199 aa21.17■□□□□ 0.98
SRPRA-201ENST00000332118 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
SRPRA-201ENST00000332118 PPARGC1BQ86YN6 1023 aaKnown RBP21.1■□□□□ 0.97
SRPRA-201ENST00000332118 GAPVD1Q14C86 1478 aa21.1■□□□□ 0.97
SRPRA-201ENST00000332118 CFAP43Q8NDM7 1665 aa21.1■□□□□ 0.97
SRPRA-201ENST00000332118 SAMD9Q5K651 1589 aa21.09■□□□□ 0.97
SRPRA-201ENST00000332118 AQRO60306 1485 aaKnown RBP eCLIP21.07■□□□□ 0.969e-7■■■■□ 24
SRPRA-201ENST00000332118 TIAM1Q13009 1591 aa21.04■□□□□ 0.96
SRPRA-201ENST00000332118 THOC2Q8NI27 1593 aaKnown RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms