Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMK1P53667 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.53■□□□□ 0.72
LIMK1P53667 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.53■□□□□ 0.72
LIMK1P53667 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
LIMK1P53667 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.53■□□□□ 0.72
LIMK1P53667 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMK1P53667 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.53■□□□□ 0.72
LIMK1P53667 FAM87A-204ENST00000613235 858 ntBASIC19.53■□□□□ 0.72
LIMK1P53667 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMK1P53667 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LIMK1P53667 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMK1P53667 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.53■□□□□ 0.72
LIMK1P53667 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMK1P53667 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LIMK1P53667 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LIMK1P53667 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMK1P53667 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMK1P53667 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LIMK1P53667 MESTP1-201ENST00000404287 994 ntBASIC19.52■□□□□ 0.72
LIMK1P53667 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.52■□□□□ 0.72
LIMK1P53667 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMK1P53667 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.52■□□□□ 0.72
LIMK1P53667 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMK1P53667 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
LIMK1P53667 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
LIMK1P53667 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
LIMK1P53667 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LIMK1P53667 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.51■□□□□ 0.71
LIMK1P53667 HMGA1P5-201ENST00000412453 271 ntBASIC19.51■□□□□ 0.71
LIMK1P53667 FAM207BP-201ENST00000447172 505 ntBASIC19.51■□□□□ 0.71
LIMK1P53667 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.51■□□□□ 0.71
LIMK1P53667 AL121956.5-201ENST00000625261 221 ntBASIC19.51■□□□□ 0.71
LIMK1P53667 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMK1P53667 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.51■□□□□ 0.71
LIMK1P53667 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMK1P53667 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIMK1P53667 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMK1P53667 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
LIMK1P53667 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.5■□□□□ 0.71
LIMK1P53667 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMK1P53667 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMK1P53667 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMK1P53667 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LIMK1P53667 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.5■□□□□ 0.71
LIMK1P53667 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMK1P53667 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMK1P53667 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.49■□□□□ 0.71
LIMK1P53667 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMK1P53667 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIMK1P53667 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMK1P53667 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.49■□□□□ 0.71
LIMK1P53667 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMK1P53667 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMK1P53667 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMK1P53667 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMK1P53667 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMK1P53667 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMK1P53667 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms