Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.5■□□□□ 0.23
ABCA1O95477 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ABCA1O95477 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
ABCA1O95477 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ABCA1O95477 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 UPK3BP1-201ENST00000428678 509 ntBASIC16.5■□□□□ 0.23
ABCA1O95477 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA1O95477 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
ABCA1O95477 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA1O95477 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ABCA1O95477 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.49■□□□□ 0.23
ABCA1O95477 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.49■□□□□ 0.23
ABCA1O95477 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.49■□□□□ 0.23
ABCA1O95477 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
ABCA1O95477 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
ABCA1O95477 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ABCA1O95477 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
ABCA1O95477 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.49■□□□□ 0.23
ABCA1O95477 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.49■□□□□ 0.23
ABCA1O95477 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.49■□□□□ 0.23
ABCA1O95477 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 KRT16P1-201ENST00000399124 1418 ntBASIC16.49■□□□□ 0.23
ABCA1O95477 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 AC011484.1-201ENST00000377652 1995 ntBASIC16.49■□□□□ 0.23
ABCA1O95477 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA1O95477 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ABCA1O95477 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA1O95477 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.48■□□□□ 0.23
ABCA1O95477 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.48■□□□□ 0.23
ABCA1O95477 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA1O95477 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
ABCA1O95477 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ABCA1O95477 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ABCA1O95477 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ABCA1O95477 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.48■□□□□ 0.23
ABCA1O95477 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA1O95477 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
ABCA1O95477 AC023632.3-201ENST00000521633 145 ntBASIC16.48■□□□□ 0.23
ABCA1O95477 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.48■□□□□ 0.23
ABCA1O95477 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ABCA1O95477 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA1O95477 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
ABCA1O95477 AC027702.1-201ENST00000563810 1770 ntBASIC16.47■□□□□ 0.23
ABCA1O95477 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.47■□□□□ 0.23
ABCA1O95477 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.47■□□□□ 0.23
ABCA1O95477 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.47■□□□□ 0.23
ABCA1O95477 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA1O95477 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA1O95477 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
ABCA1O95477 KRT8P36-201ENST00000489121 1440 ntBASIC16.47■□□□□ 0.23
ABCA1O95477 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms