Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
COMMD3-BMI1R4GMX3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COMMD3-BMI1R4GMX3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.52■□□□□ 0.56
COMMD3-BMI1R4GMX3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.52■□□□□ 0.55
COMMD3-BMI1R4GMX3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COMMD3-BMI1R4GMX3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COMMD3-BMI1R4GMX3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COMMD3-BMI1R4GMX3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COMMD3-BMI1R4GMX3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC012414.1-201ENST00000556676 535 ntBASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC090340.1-201ENST00000620778 4980 ntBASIC18.51■□□□□ 0.55
COMMD3-BMI1R4GMX3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COMMD3-BMI1R4GMX3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC068880.1-201ENST00000507289 2297 ntBASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.49■□□□□ 0.55
COMMD3-BMI1R4GMX3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC011484.1-201ENST00000377652 1995 ntBASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 TREX1-205ENST00000625293 1783 ntBASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC106820.2-201ENST00000563775 3264 ntBASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 SUDS3P1-201ENST00000505831 966 ntBASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.48■□□□□ 0.55
COMMD3-BMI1R4GMX3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms